Browse Element(s) Details


OsAffx.17245.1.S1_at

Description tigr:9636.m03049
TID=OsAffx.17245.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3056011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30550Os.54691.1.S1_x_at4/118+18668980..18681773hypothetical protein
LOC_Os08g30550Os.45902.1.A1_x_at2/118+18668980..18681773hypothetical protein
LOC_Os08g30550OsAffx.22442.1.S1_x_at1/118+18668980..18681773hypothetical protein
LOC_Os08g30550OsAffx.10222.1.S1_x_at1/118+18668980..18681773hypothetical protein
LOC_Os08g30550Os.51841.1.S1_x_at1/118+18668980..18681773hypothetical protein
LOC_Os08g30550Os.10263.1.S1_at1/118+18668980..18681773hypothetical protein
LOC_Os08g30560OsAffx.17245.1.S1_at11/118+18692574..18696243hypothetical protein
LOC_Os08g30569NANA8+18698496..18698800NA
LOC_Os08g30580OsAffx.17246.1.S1_at11/118+18702015..18703765hypothetical protein
LOC_Os08g30590OsAffx.17247.1.S1_at11/118+18716938..18720070C1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17245.1.S1_at--304--9471Chr08:18695934..18695958 (25 bp)
TCTGATTTTTGGATGGAGCTTTGCA
LOC_Os08g30560
OsAffx.17245.1.S1_at--966--8071Chr08:18695920..18695944 (25 bp)
GGAGCTTTGCATGCAATGTATGGAT
LOC_Os08g30560
OsAffx.17245.1.S1_at--691--3111Chr08:18695890..18695914 (25 bp)
AATATTTTTGTTGGCACCAGAATCA
LOC_Os08g30560
OsAffx.17245.1.S1_at--72--2411Chr08:18695365..18695389 (25 bp)
AAACAAGCATGCCTAACACTCCGAG
LOC_Os08g30560
OsAffx.17245.1.S1_at--696--2471Chr08:18695351..18695375 (25 bp)
AACACTCCGAGTTTTCTCATTGCAA
LOC_Os08g30560
OsAffx.17245.1.S1_at--200--6071Chr08:18695343..18695367 (25 bp)
GAGTTTTCTCATTGCAAGCTACCAA
LOC_Os08g30560
OsAffx.17245.1.S1_at--139--531Chr08:18692762..18692786 (25 bp)
ATCGACGTCAGGGAGGCATCACTTG
LOC_Os08g30560
OsAffx.17245.1.S1_at--25--3551Chr08:18692746..18692770 (25 bp)
CATCACTTGGCGGTGTAGGAAGACA
LOC_Os08g30560
OsAffx.17245.1.S1_at--137--3891Chr08:18692709..18692733 (25 bp)
CTGTCAATGGAAGCCGGCAGTCAAG
LOC_Os08g30560
OsAffx.17245.1.S1_at--524--1051Chr08:18692677..18692701 (25 bp)
AGGTGGAGCCCGGTGTCATGGATAT
LOC_Os08g30560
OsAffx.17245.1.S1_at--592--7311Chr08:18692631..18692655 (25 bp)
GTGCTGCTCGGTGGAATTTGATGAT
LOC_Os08g30560
Target Sequence 
TCTGATTTTTGGATGGAGCTTTGCATGCAATGTATGGATGAGTTAATATTTTTGTTGGCACCAGAATCAAAATATTATGA
TAATCTTAATTATAAGCTGAAACAAGCATGCCTAACACTCCGAGTTTTCTCATTGCAAGCTACCAAGAAAGAGAAACATG
CGAGGGGTGGGGGAGCTGAGGAGGTGGCGACTGGTGTGGGGGAGGCGGCAGCCGTTGTGGAAACAGAGGAGGCAGTGGTT
GGCTGTCTTCCAGGTGGGCGTGAAGGCAGCCGGTGTCGAGGGCAGCGTGAAGGCGGCGGCTGTTGTGGAGGCAGAGGAGG
TGGAGGCAGGTGGTCTTCGAGGAGAGTGGGAGGCCGGAGGCGGTTGATGATCGACGTCAGGGAGGCATCACTTGGCGGTG
TAGGAAGACAGTGCGGTGGAGGCTGTCAATGGAAGCCGGCAGTCAAGGGCGGGGAGGTGGAGCCCGGTGTCATGGATATG
GAGAGGTCGAGGGCAGGGAGGTGCTGCTCGGTGGAATTTGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis