Browse Element(s) Details


OsAffx.17246.1.S1_at

Description tigr:9636.m03051
TID=OsAffx.17246.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3058011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30550Os.54691.1.S1_x_at4/118+18668980..18681773hypothetical protein
LOC_Os08g30550Os.45902.1.A1_x_at2/118+18668980..18681773hypothetical protein
LOC_Os08g30550OsAffx.22442.1.S1_x_at1/118+18668980..18681773hypothetical protein
LOC_Os08g30550OsAffx.10222.1.S1_x_at1/118+18668980..18681773hypothetical protein
LOC_Os08g30550Os.51841.1.S1_x_at1/118+18668980..18681773hypothetical protein
LOC_Os08g30550Os.10263.1.S1_at1/118+18668980..18681773hypothetical protein
LOC_Os08g30560OsAffx.17245.1.S1_at11/118+18692574..18696243hypothetical protein
LOC_Os08g30569NANA8+18698496..18698800NA
LOC_Os08g30580OsAffx.17246.1.S1_at11/118+18702015..18703765hypothetical protein
LOC_Os08g30590OsAffx.17247.1.S1_at11/118+18716938..18720070C1-like domain containing protein, expressed
LOC_Os08g30600Os.47463.1.S1_x_at2/118+18723983..18727692transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30600Os.14491.2.S1_x_at2/118+18723983..18727692transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17246.1.S1_at--4--3351Chr08:18702045..18702069 (25 bp)
CACGACCGCACTCTAGGATCGCAGC
LOC_Os08g30580
OsAffx.17246.1.S1_at--303--5111Chr08:18702052..18702076 (25 bp)
GCACTCTAGGATCGCAGCCGCAACC
LOC_Os08g30580
OsAffx.17246.1.S1_at--1031--4111Chr08:18702096..18702120 (25 bp)
CGCACCAAGGTGACCAACCGTTCGA
LOC_Os08g30580
OsAffx.17246.1.S1_at--392--5071Chr08:18702097..18702121 (25 bp)
GCACCAAGGTGACCAACCGTTCGAC
LOC_Os08g30580
OsAffx.17246.1.S1_at--32--3371Chr08:18702098..18702122 (25 bp)
CACCAAGGTGACCAACCGTTCGACG
LOC_Os08g30580
OsAffx.17246.1.S1_at--524--3191Chr08:18702101..18702125 (25 bp)
CAAGGTGACCAACCGTTCGACGGCG
LOC_Os08g30580
OsAffx.17246.1.S1_at--85--7391Chr08:18702105..18702129 (25 bp)
GTGACCAACCGTTCGACGGCGGTGA
LOC_Os08g30580
OsAffx.17246.1.S1_at--607--8911Chr08:18702106..18702130 (25 bp)
TGACCAACCGTTCGACGGCGGTGAA
LOC_Os08g30580
OsAffx.17246.1.S1_at--307--4031Chr08:18702114..18702138 (25 bp)
CGTTCGACGGCGGTGAAAGCTAATC
LOC_Os08g30580
OsAffx.17246.1.S1_at--337--6711Chr08:18702115..18702139 (25 bp)
GTTCGACGGCGGTGAAAGCTAATCA
LOC_Os08g30580
OsAffx.17246.1.S1_at--581--10591Chr08:18702116..18702140 (25 bp)
TTCGACGGCGGTGAAAGCTAATCAC
LOC_Os08g30580
Target Sequence 
CACGACCGCACTCTAGGATCGCAGCCGCAACCACCTACCGCGCACACGCGCCGCACCAAGGTGACCAACCGTTCGACGGC
GGTGAAAGCTAATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis