Browse Element(s) Details


OsAffx.28363.1.S1_at

Description tigr:9635.m00911
TID=OsAffx.28363.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATPase, AAA family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0949011/11Cell Division Protein AAA ATPase family, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09460OsAffx.16174.1.S1_at11/117+4986453..4996726expressed protein
LOC_Os07g09470NANA7+4997119..4998846Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os07g09480Os.56296.1.S1_at11/117+5002172..5004026ATPase, AAA family protein, expressed
LOC_Os07g09490OsAffx.28363.1.S1_at11/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09490OsAffx.25760.1.S1_x_at1/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09500OsAffx.16175.1.S1_at10/117+5011088..5012727hypothetical protein
LOC_Os07g09510Os.9419.1.S1_at10/117+5013651..5018509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g09520OsAffx.28364.1.S1_at11/117+5021990..5025978HIPL1 protein precursor, putative, expressed
LOC_Os07g09520OsAffx.28364.1.S1_x_at11/117+5021990..5025978HIPL1 protein precursor, putative, expressed
LOC_Os07g09530OsAffx.28365.1.S1_at11/117+5028926..5032124hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28363.1.S1_at--151--9571Chr07:5008434..5008458 (25 bp)
TCTTCATCGAGACCAAGGGCAAGTC
LOC_Os07g09490
OsAffx.28363.1.S1_at--226--5171Chr07:5008365..5008389 (25 bp)
GCAAGCGCAAGAAGAGGTCTCCTCA
LOC_Os07g09490
OsAffx.28363.1.S1_at--542--5171Chr07:5008359..5008383 (25 bp)
GCAAGAAGAGGTCTCCTCACGCCGC
LOC_Os07g09490
OsAffx.28363.1.S1_at--246--1871Chr07:5008299..5008323 (25 bp)
ACGAGAGCGCGAGCAAGGTGACGCT
LOC_Os07g09490
OsAffx.28363.1.S1_at--634--10591Chr07:5008123..5008147 (25 bp)
TTCGAGACGTTCAAGATCCTGGCCA
LOC_Os07g09490
OsAffx.28363.1.S1_at--1130--5751Chr07:5008060..5008084 (25 bp)
GACGTGCGATCGCTCCTCCAGGACG
LOC_Os07g09490
OsAffx.28363.1.S1_at--1136--6371Chr07:5008053..5008077 (25 bp)
GATCGCTCCTCCAGGACGCCAGGAT
LOC_Os07g09490
OsAffx.28363.1.S1_at--225--4291Chr07:5008046..5008070 (25 bp)
CCTCCAGGACGCCAGGATCAAGATC
LOC_Os07g09490
OsAffx.28363.1.S1_at--274--4231Chr07:5008005..5008029 (25 bp)
CCGAGCACCTGATGCGCAAGTGCGC
LOC_Os07g09490
OsAffx.28363.1.S1_at--1036--3851Chr07:5007997..5008021 (25 bp)
CTGATGCGCAAGTGCGCCACAGCCG
LOC_Os07g09490
OsAffx.28363.1.S1_at--338--9171Chr07:5007952..5007976 (25 bp)
TGCCTCGCCAGCTTGGTGAAGGCGC
LOC_Os07g09490
Target Sequence 
TCTTCATCGAGACCAAGGGCAAGTCCATCATCGTCATCGAGGACATCGACTGCTCCGTCGACCTCACCGGCAAGCGCAAG
AAGAGGTCTCCTCACGCCGCCGCCGCCGCCGCCGAGCCCGTCGACGCCGCCAAGGACGAGAGCGCGAGCAAGGTGACGCT
CTCCGGCCTCCTCAACGTCATCGACGGGCTCTGGTCGGCGTGCGGCGGCGAGCGCATCGTCGTGTTCACCACCAACCACG
TCGGCAAGCTGGACCCGGCGCTGATCCGGCGAGGCCGCATGGACAAGCACATCGAGATGTCATACTGCTGCTTCGAGACG
TTCAAGATCCTGGCCAAGAACTACCTCGCCATCGACGCCCACCACCTGTTCGACGACGTGCGATCGCTCCTCCAGGACGC
CAGGATCAAGATCACCCCGGCCGACGTCGCCGAGCACCTGATGCGCAAGTGCGCCACAGCCGCCGCCGACGAGGCTGCCG
CCTGCCTCGCCAGCTTGGTGAAGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis