Browse Element(s) Details


OsAffx.28379.1.S1_at

Description tigr:9635.m00987
TID=OsAffx.28379.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=anthocyanidine rhamnosyl-transferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1023011/11hydroquinone glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10170OsAffx.5278.1.S1_at10/117+5471891..5473233hypothetical protein
LOC_Os07g10180OsAffx.16189.1.S1_at11/117+5476478..5477071hypothetical protein
LOC_Os07g10190Os.51134.1.S1_at11/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10190Os.51134.2.S1_x_at2/117+5478786..5480876UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os07g10200OsAffx.28377.1.S1_at11/117+5483651..5484775hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_at11/117+5488074..5488562hypothetical protein
LOC_Os07g10210OsAffx.16190.1.S1_x_at11/117+5488074..5488562hypothetical protein
LOC_Os07g10220Os.51134.2.S1_x_at2/117+5489010..5489558glycosyltransferase family protein, putative
LOC_Os07g10230OsAffx.28379.1.S1_at11/117+5490306..5491157hydroquinone glucosyltransferase, putative, expressed
LOC_Os07g10240NANA7+5495790..5497289UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g10250Os.25626.1.S1_at11/117+5498540..5504789ATP-dependent RNA helicase An3, putative, expressed
LOC_Os07g10254Os.51539.1.S1_at11/117+5505323..5506008expressed protein
LOC_Os07g10260NANA7+5509781..5510035hypothetical protein
LOC_Os07g10270OsAffx.6537.1.S1_at1/117+5511800..5513220hypothetical protein
LOC_Os07g10280NANA7+5513866..5514120hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28379.1.S1_at--992--6191Chr07:5490615..5490639 (25 bp)
GAGGCACCTATCACAACAAACCATG
LOC_Os07g10230
OsAffx.28379.1.S1_at--451--1831Chr07:5490641..5490665 (25 bp)
ACGCGAGCTCGCACTTGGACTAGAG
LOC_Os07g10230
OsAffx.28379.1.S1_at--218--2031Chr07:5490659..5490683 (25 bp)
ACTAGAGCTCTCTGGTGTACGCTTC
LOC_Os07g10230
OsAffx.28379.1.S1_at--345--2391Chr07:5490721..5490745 (25 bp)
AAACTGGAACATTCCTCCCAAGCGG
LOC_Os07g10230
OsAffx.28379.1.S1_at--218--1631Chr07:5490741..5490765 (25 bp)
AGCGGGTTCGAGTCACGTGTTGCCA
LOC_Os07g10230
OsAffx.28379.1.S1_at--253--7791Chr07:5490791..5490815 (25 bp)
GGTGCCACAAGTGCGTGTGCTTGCA
LOC_Os07g10230
OsAffx.28379.1.S1_at--890--891Chr07:5490827..5490851 (25 bp)
AGGCGCATTCCTAACACACTGTGGT
LOC_Os07g10230
OsAffx.28379.1.S1_at--1096--2691Chr07:5490869..5490893 (25 bp)
AAGCTTTTGCTTTGGTCACCCTCTA
LOC_Os07g10230
OsAffx.28379.1.S1_at--1127--8851Chr07:5490895..5490919 (25 bp)
TGATGCTACCTTTTGTCGCCGATCA
LOC_Os07g10230
OsAffx.28379.1.S1_at--361--8851Chr07:5490925..5490949 (25 bp)
TGATCGCTCAGGCAATGGCTGCAAG
LOC_Os07g10230
OsAffx.28379.1.S1_at--265--1051Chr07:5491075..5491099 (25 bp)
AGGTGCATAGCATCCTCGGAGATAG
LOC_Os07g10230
Target Sequence 
GAGGCACCTATCACAACAAACCATGTACGCGAGCTCGCACTTGGACTAGAGCTCTCTGGTGTACGCTTCCTCTGGGCACT
CCGTCCTCCGAGTGGCATCAACAGCCAAACTGGAACATTCCTCCCAAGCGGGTTCGAGTCACGTGTTGCCACACGTGGCA
TAGTGTGCACAGAGTGGGTGCCACAAGTGCGTGTGCTTGCACATGGTGCAATAGGCGCATTCCTAACACACTGTGGTTGG
GGCTCCACCGTGGAAAGCTTTTGCTTTGGTCACCCTCTAGTGATGCTACCTTTTGTCGCCGATCAGGGCCTGATCGCTCA
GGCAATGGCTGCAAGGGGGATAGGAGTGGAGGTGGCGAGGAACTATGACGATGGTTCGTTCTATAGGGATGATGTTGCAG
CAGCGGTTAGGCGGGTGATGGTGGAGGAGGAGGGGAAGGTATTGGCAAGAAAGGCTAAGGAGGTGCATAGCATCCTCGGA
GATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis