Browse Element(s) Details


OsAffx.28407.1.S1_at

Description tigr:9635.m01180
TID=OsAffx.28407.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1203011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12020Os.46012.3.S1_x_at7/117+6707307..6712471retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12020Os.46012.2.S1_x_at6/117+6707307..6712471retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12020Os.27088.1.A1_x_at2/117+6707307..6712471retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12030OsAffx.28407.1.S1_at11/117+6718155..6718643hypothetical protein
LOC_Os07g12040NANA7+6723681..6725100hypothetical protein
LOC_Os07g12050OsAffx.5296.1.S1_at11/117+6727387..6728068hypothetical protein
LOC_Os07g12060OsAffx.22699.1.S1_x_at3/117+6731029..6737714retrotransposon protein, putative, unclassified
LOC_Os07g12070NANA7+6738336..6741143hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28407.1.S1_at--360--591Chr07:6718588..6718612 (25 bp)
ATGCCAACGTGCGTGGTACTTCATG
LOC_Os07g12030
OsAffx.28407.1.S1_at--331--4671Chr07:6718578..6718602 (25 bp)
GCGTGGTACTTCATGCCAAGCATAC
LOC_Os07g12030
OsAffx.28407.1.S1_at--1157--311Chr07:6718557..6718581 (25 bp)
ATACGGAGGTAACTTGCTAGGCACA
LOC_Os07g12030
OsAffx.28407.1.S1_at--1057--8191Chr07:6718512..6718536 (25 bp)
GGAAGGGACCTATCTCTGCAAGAGT
LOC_Os07g12030
OsAffx.28407.1.S1_at--555--9011Chr07:6718496..6718520 (25 bp)
TGCAAGAGTTCACCGCAGCTATCCG
LOC_Os07g12030
OsAffx.28407.1.S1_at--71--10131Chr07:6718477..6718501 (25 bp)
TATCCGCGGAGAGACAGACGTCCAT
LOC_Os07g12030
OsAffx.28407.1.S1_at--564--1391Chr07:6718462..6718486 (25 bp)
AGACGTCCATCGACTTGGGTGCAAT
LOC_Os07g12030
OsAffx.28407.1.S1_at--882--3131Chr07:6718441..6718464 (24 bp)
AATTCTGCACAAGCTTGGTTCCCGA
LOC_Os07g12030
OsAffx.28407.1.S1_at--382--1551Chr07:6718243..6718453 (25 bp)
AGCTTGGTTCCCGATGTGCTTATGG
LOC_Os07g12030
OsAffx.28407.1.S1_at--461--3611Chr07:6718215..6718239 (25 bp)
CATTGGCTTGCTTGTTTGGGAGTAC
LOC_Os07g12030
OsAffx.28407.1.S1_at--923--9191Chr07:6718186..6718210 (25 bp)
TGCCATGTGATGGTCTTGCTACCGG
LOC_Os07g12030
Target Sequence 
ATGCCAACGTGCGTGGTACTTCATGCCAAGCATACGGAGGTAACTTGCTAGGCACAATGTTGCATGATGTGGTCACGGAA
GGGACCTATCTCTGCAAGAGTTCACCGCAGCTATCCGCGGAGAGACAGACGTCCATCGACTTGGGTGCAATTCTGCACAA
GCTTGGTTCCCGATGTGCTTATGGGGACATTGGCTTGCTTGTTTGGGAGTACTTCTTGCCATGTGATGGTCTTGCTACCG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis