Browse Element(s) Details


OsAffx.5296.1.S1_at

Description tigr:9635.m01181
TID=OsAffx.5296.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1205011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12020Os.46012.3.S1_x_at7/117+6707307..6712471retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12020Os.46012.2.S1_x_at6/117+6707307..6712471retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12020Os.27088.1.A1_x_at2/117+6707307..6712471retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12030OsAffx.28407.1.S1_at11/117+6718155..6718643hypothetical protein
LOC_Os07g12040NANA7+6723681..6725100hypothetical protein
LOC_Os07g12050OsAffx.5296.1.S1_at11/117+6727387..6728068hypothetical protein
LOC_Os07g12060OsAffx.22699.1.S1_x_at3/117+6731029..6737714retrotransposon protein, putative, unclassified
LOC_Os07g12070NANA7+6738336..6741143hypothetical protein
LOC_Os07g12080Os.5494.1.S1_at11/117+6743983..6744648Trypsin/factor XIIA inhibitor precursor, putative, expressed
LOC_Os07g12090NANA7+6745165..6745467hypothetical protein
LOC_Os07g12100Os.31338.1.S1_at11/117+6746912..6753743expressed protein
LOC_Os07g12100OsAffx.10212.1.S1_at11/117+6746912..6753743expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5296.1.S1_at--990--7631Chr07:6727781..6727805 (25 bp)
GGGACCTCATACATGGTGGCTGGCT
LOC_Os07g12050
OsAffx.5296.1.S1_at--242--2771Chr07:6727683..6727707 (25 bp)
AAGAGTTTCTCCAAGCCAAAGCCTA
LOC_Os07g12050
OsAffx.5296.1.S1_at--196--1691Chr07:6727670..6727694 (25 bp)
AGCCAAAGCCTAACCTATTTTATGG
LOC_Os07g12050
OsAffx.5296.1.S1_at--681--8491Chr07:6727644..6727668 (25 bp)
TGGCAACATCAATACTTTCAAGGGC
LOC_Os07g12050
OsAffx.5296.1.S1_at--425--9731Chr07:6727627..6727651 (25 bp)
TCAAGGGCCGCTATACCTGATTGGA
LOC_Os07g12050
OsAffx.5296.1.S1_at--174--2531Chr07:6727554..6727578 (25 bp)
AACTCTTTGCTGATTCCTAGGGTAG
LOC_Os07g12050
OsAffx.5296.1.S1_at--840--1251Chr07:6727511..6727535 (25 bp)
AGATCGCAACCTCGTTGGAGGCGTT
LOC_Os07g12050
OsAffx.5296.1.S1_at--1001--7991Chr07:6727495..6727519 (25 bp)
GGAGGCGTTGTTTGAAGGACCAATC
LOC_Os07g12050
OsAffx.5296.1.S1_at--276--971Chr07:6727480..6727504 (25 bp)
AGGACCAATCTATTCTCTATACAGT
LOC_Os07g12050
OsAffx.5296.1.S1_at--732--9871Chr07:6727461..6727485 (25 bp)
TACAGTTTGTCATCCTATGGCGGTG
LOC_Os07g12050
OsAffx.5296.1.S1_at--252--10111Chr07:6727446..6727470 (25 bp)
TATGGCGGTGCTTCTGTCTACCACA
LOC_Os07g12050
Target Sequence 
GGGACCTCATACATGGTGGCTGGCTGGCGGTCGGGGCGCTAAAGGGGTTTTGGATGGTGGTGGCTGGTGGGAGCAATGGG
GATGTGGCATGGGATGGCAAGAGTTTCTCCAAGCCAAAGCCTAACCTATTTTATGGTTGGCAACATCAATACTTTCAAGG
GCCGCTATACCTGATTGGAGGTGGTGCCGCGGTGTTCTCTTCCCTCCCGAGGAAACCTTTGGGTGAAAACTCTTTGCTGA
TTCCTAGGGTAGGCAGTGGCGGCGCCTACGAGATCGCAACCTCGTTGGAGGCGTTGTTTGAAGGACCAATCTATTCTCTA
TACAGTTTGTCATCCTATGGCGGTGCTTCTGTCTACCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis