Browse Element(s) Details


OsAffx.10212.1.S1_at

Description gb:NM_186618.1
DB_XREF= gi:34900321
GEN=P0592C06.9
TID=OsAffx.10212.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0592C06.9 (P0592C06.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1210011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12040NANA7+6723681..6725100hypothetical protein
LOC_Os07g12050OsAffx.5296.1.S1_at11/117+6727387..6728068hypothetical protein
LOC_Os07g12060OsAffx.22699.1.S1_x_at3/117+6731029..6737714retrotransposon protein, putative, unclassified
LOC_Os07g12070NANA7+6738336..6741143hypothetical protein
LOC_Os07g12080Os.5494.1.S1_at11/117+6743983..6744648Trypsin/factor XIIA inhibitor precursor, putative, expressed
LOC_Os07g12090NANA7+6745165..6745467hypothetical protein
LOC_Os07g12100Os.31338.1.S1_at11/117+6746912..6753743expressed protein
LOC_Os07g12100OsAffx.10212.1.S1_at11/117+6746912..6753743expressed protein
LOC_Os07g12110Os.6714.1.S1_a_at11/117+6761788..6765633Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g12120OsAffx.16222.1.S1_at11/117+6775171..6776190hypothetical protein
LOC_Os07g12130OsAffx.28408.1.S1_at11/117+6777673..6779818Myb-like DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10212.1.S1_at--743--3971Chr07:6753689..6753713 (25 bp)
CGGTGGAGAATGCTGGCCGACGTGG
LOC_Os07g12100
OsAffx.10212.1.S1_at--467--991Chr07:6753585..6753609 (25 bp)
AGGAGGCCTGGATCTCGCTGGCCTC
LOC_Os07g12100
OsAffx.10212.1.S1_at--328--9272Chr01:36779781..36779801 (21 bp)
TCCTCCTCTAGCATGGCGTGGCATG
NONE
OsAffx.10212.1.S1_at--1054--3751Chr07:6753522..6753546 (25 bp)
CTCTAGCATGGCGTGGCATGGCGAC
LOC_Os07g12100
OsAffx.10212.1.S1_at--366--871Chr07:6753515..6753539 (25 bp)
ATGGCGTGGCATGGCGACCGACGTG
LOC_Os07g12100
OsAffx.10212.1.S1_at--1149--6931Chr07:6753485..6753509 (25 bp)
GTAGTAGTGCGGTCGTTGGATCTCA
LOC_Os07g12100
OsAffx.10212.1.S1_at--749--1191Chr07:6753483..6753507 (25 bp)
AGTAGTGCGGTCGTTGGATCTCATC
LOC_Os07g12100
OsAffx.10212.1.S1_at--419--10071Chr07:6753481..6753505 (25 bp)
TAGTGCGGTCGTTGGATCTCATCGA
LOC_Os07g12100
OsAffx.10212.1.S1_at--1054--9131Chr07:6753478..6753502 (25 bp)
TGCGGTCGTTGGATCTCATCGACAC
LOC_Os07g12100
OsAffx.10212.1.S1_at--795--3811Chr07:6753427..6753451 (25 bp)
CTCCTCTAGCGCAGCGTTGGGTGGC
LOC_Os07g12100
OsAffx.10212.1.S1_at--989--4251Chr07:6753324..6753348 (25 bp)
CCGGTGGCAGTGTAGGTGCCATTAT
LOC_Os07g12100
Target Sequence 
CGGTGGAGAATGCTGGCCGACGTGGGCGAGGAGGCAGTGCGGGGGAGGCGGAGGCCGGCGCCGAGGCTGGCGCGGCGAGG
TGGCTGCGACGGCGGCGGTGGTGGAGGAGGCCTGGATCTCGCTGGCCTCCTCTCTCCCGGGGGACCTCGCCCCCTTCCCT
TCTCCTCCTCTAGCATGGCGTGGCATGGCGACCGACGTGGCGAGGTAGTAGTGCGGTCGTTGGATCTCATCGACACCCTC
TCTCCTGGGGGACCTCCCCCCCCTCCTCTAGCGCAGCGTTGGGTGGCGGCCGCCGGCGCGGAGGCAGGCATGGCTAGGTG
GTGGCGTGGAGGCCGGGCGAAGTGGTGGTGGCGGCGGTGTAGAAGCCGGTGGCAGTGTAGGTGCCATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis