Browse Element(s) Details


OsAffx.16222.1.S1_at

Description tigr:9635.m01188
TID=OsAffx.16222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1212011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12100Os.31338.1.S1_at11/117+6746912..6753743expressed protein
LOC_Os07g12100OsAffx.10212.1.S1_at11/117+6746912..6753743expressed protein
LOC_Os07g12110Os.6714.1.S1_a_at11/117+6761788..6765633Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g12120OsAffx.16222.1.S1_at11/117+6775171..6776190hypothetical protein
LOC_Os07g12130OsAffx.28408.1.S1_at11/117+6777673..6779818Myb-like DNA-binding domain containing protein
LOC_Os07g12140Os.32977.1.S1_x_at11/117+6789113..6794916DNA-binding protein, putative, expressed
LOC_Os07g12140OsAffx.32241.1.A1_at2/117+6789113..6794916DNA-binding protein, putative, expressed
LOC_Os07g12150Os.14385.1.S1_at11/117+6797286..6798153Acyl carrier protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16222.1.S1_at--796--1711Chr07:6775211..6775235 (25 bp)
ACCATCAACAACTCCTGGTTGAGGA
LOC_Os07g12120
OsAffx.16222.1.S1_at--763--9692Chr07:6775215..6775239 (25 bp)
TCAACAACTCCTGGTTGAGGAAGGA
LOC_Os07g12120
OsAffx.16222.1.S1_at--835--8193Chr07:6775233..6775257 (25 bp)
GGAAGGAGTTACCTGCAGCCATCAT
LOC_Os07g12120
OsAffx.16222.1.S1_at--805--8031Chr07:6775237..6775261 (25 bp)
GGAGTTACCTGCAGCCATCATCAAC
LOC_Os07g12120
OsAffx.16222.1.S1_at--523--3551Chr07:6775252..6775276 (25 bp)
CATCATCAACTCACCTTCGAAGGAA
LOC_Os07g12120
OsAffx.16222.1.S1_at--1033--2511Chr07:6775259..6775283 (25 bp)
AACTCACCTTCGAAGGAATGAAGCA
LOC_Os07g12120
OsAffx.16222.1.S1_at--45--5391Chr07:6775278..6775302 (25 bp)
GAAGCAAGGGCAAGAATCACTGATT
LOC_Os07g12120
OsAffx.16222.1.S1_at--601--10251Chr07:6775312..6775336 (25 bp)
TTTAGGGAAGGCAAAGCGACCTCAC
LOC_Os07g12120
OsAffx.16222.1.S1_at--886--5291Chr07:6775318..6775342 (25 bp)
GAAGGCAAAGCGACCTCACTAGGGA
LOC_Os07g12120
OsAffx.16222.1.S1_at--961--5131Chr07:6775322..6775346 (25 bp)
GCAAAGCGACCTCACTAGGGAGCAA
LOC_Os07g12120
OsAffx.16222.1.S1_at--504--4611Chr07:6775327..6775351 (25 bp)
GCGACCTCACTAGGGAGCAAATTGA
LOC_Os07g12120
Target Sequence 
ACCATCAACAACTCCTGGTTGAGGAAGGAGTTACCTGCAGCCATCATCAACTCACCTTCGAAGGAATGAAGCAAGGGCAA
GAATCACTGATTGGGGAGGATTTTAGGGAAGGCAAAGCGACCTCACTAGGGAGCAAATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis