Browse Element(s) Details


OsAffx.32241.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32241.1
CNT=1
FEA=DNA_92
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NADH dehydrogenase 49kDa protein (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=NADH dehydrogenase 49kDa protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g121402/11DNA-binding protein, putative, expressed
LOC_Os03g289601/11DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12110Os.6714.1.S1_a_at11/117+6761788..6765633Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g12120OsAffx.16222.1.S1_at11/117+6775171..6776190hypothetical protein
LOC_Os07g12130OsAffx.28408.1.S1_at11/117+6777673..6779818Myb-like DNA-binding domain containing protein
LOC_Os07g12140Os.32977.1.S1_x_at11/117+6789113..6794916DNA-binding protein, putative, expressed
LOC_Os07g12140OsAffx.32241.1.A1_at2/117+6789113..6794916DNA-binding protein, putative, expressed
LOC_Os07g12150Os.14385.1.S1_at11/117+6797286..6798153Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os07g12160Os.40210.1.S1_at10/117+6801713..68048772-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein, expressed
LOC_Os07g12170Os.10276.2.S1_at10/117+6807581..6810987ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12170Os.12389.1.S1_x_at1/117+6807581..6810987ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12180OsAffx.22708.5.S1_x_at7/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.1.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.2.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.5.S1_at3/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.3.S1_x_at9/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.4.S1_x_at8/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006350biological_processtranscription
GO:0030422biological_processRNA interference, production of siRNA
GO:0031047biological_processRNA-mediated gene silencing
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005634cellular_componentnucleus
GO:0005720cellular_componentnuclear heterochromatin
GO:0016591cellular_componentDNA-directed RNA polymerase II, holoenzyme
GO:0030880cellular_componentRNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32241.1.A1_at--486--6655Chr12:5629238..5629262 (25 bp)
GTTGATATTCAATAACTCCTCGTAA
NONE
OsAffx.32241.1.A1_at--606--9236Chr12:5629299..5629323 (25 bp)
TCCATAAGGCAGATCGGCAGCAACT
NONE
OsAffx.32241.1.A1_at--698--1496Chr12:5629317..5629341 (25 bp)
AGCAACTCCTCCGATGCGAAAGTAA
NONE
OsAffx.32241.1.A1_at--155--434Chr12:5629348..5629372 (25 bp)
ATCATTCGCATACCTGTAGCAGCTT
NONE
OsAffx.32241.1.A1_at--253--2415Chr12:5629414..5629438 (25 bp)
AAAAAGGAGTCTGCGCACCGAGATC
NONE
OsAffx.32241.1.A1_at--694--6414Chr04:23418778..23418802 (25 bp)
GATCTGCCATAAAAGGTCCAAGCCA
NONE
OsAffx.32241.1.A1_at--1078--1554Chr04:23418815..23418839 (25 bp)
AGCTATACGGCTCAATTCTAACATA
NONE
OsAffx.32241.1.A1_at--136--155Chr12:5629497..5629521 (25 bp)
ATTACCCTAATATAGCTGGCTCTTT
NONE
OsAffx.32241.1.A1_at--966--7776Chr12:5629551..5629575 (25 bp)
GGTGCATTTACCGTTATTGCTTCTG
NONE
OsAffx.32241.1.A1_at--344--1196Chr12:5629583..5629607 (25 bp)
AGTAGCTAAATAATCCCAACGTGTT
NONE
OsAffx.32241.1.A1_at--181--10175Chr07:6791078..6791102 (25 bp)
TATAATAGTTCGGTTTTCCGCGATT
LOC_Os07g12140
Target Sequence 
GTTGATATTCAATAACTCCTCGTAAAAAATAATCACAGAAATCTAAACATTTATCGATCCATCCATAAGGCAGATCGGCA
GCAACTCCTCCGATGCGAAAGTAATTATGCATCATTCGCATACCTGTAGCAGCTTCAAATAGATCATATATTAATTCTCT
CTCTCTAAAAATATAAAAAAAAGGAGTCTGCGCACCGAGATCTGCCATAAAAGGTCCAAGCCATAACAAGTGAGAAGCTA
TACGGCTCAATTCTAACATAATTACCCTAATATAGCTGGCTCTTTGGGGTATTTGAATATTCTCCAAGAATTCTGGTGCA
TTTACCGTTATTGCTTCTGTAAACATAGTAGCTAAATAATCCCAACGTGTTACATAAGGTAAGTATTGTATAATAGTTCG
GTTTTCCGCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32241.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis