Browse Element(s) Details


OsAffx.2841.1.S1_at

Description tigr:9630.m03177
TID=OsAffx.2841.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 2-cys peroxiredoxin bas1, chloroplast precursor (thiol-specific antioxidant protein) (fragment). (barley
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g334509/112-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33420Os.24851.1.S1_at11/112+19854206..19858642ATPase, AAA family protein, expressed
LOC_Os02g33430Os.423.1.S1_a_at11/112+19862332..19867439E2F protein, putative, expressed
LOC_Os02g33440NANA2+19872435..19872855hypothetical protein
LOC_Os02g33450OsAffx.2841.1.S1_at9/112+19876213..198798822-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os02g33450Os.12196.1.S1_at9/112+19876213..198798822-cys peroxiredoxin BAS1, chloroplast precursor, putative, expressed
LOC_Os02g33460NANA2+19889442..19892996transposon protein, putative, Mutator sub-class
LOC_Os02g33470NANA2+19898922..19901092transposon protein, putative, Pong sub-class
LOC_Os02g33480NANA2+19901504..19902847transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0010231biological_processmaintenance of dormancy
GO:0008379molecular_functionthioredoxin peroxidase activity
GO:0016209molecular_functionantioxidant activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2841.1.S1_at--766--10751NONE
TTGACAGTGTGTGGAGCAGAGCATT
NONE
OsAffx.2841.1.S1_at--322--8071Chr02:19878018..19878042 (25 bp)
GGAGCAGAGCATTTACGTCTTACTT
LOC_Os02g33450
OsAffx.2841.1.S1_at--738--1891Chr02:19878032..19878056 (25 bp)
ACGTCTTACTTTATTGCTTTGTACA
LOC_Os02g33450
OsAffx.2841.1.S1_at--469--1211Chr02:19878056..19878080 (25 bp)
AGTTATGATATGTCAATCCCTTTGA
LOC_Os02g33450
OsAffx.2841.1.S1_at--571--4291Chr02:19878074..19878098 (25 bp)
CCTTTGATACAAAAGACGTTCCACT
LOC_Os02g33450
OsAffx.2841.1.S1_at--67--2051Chr02:19878096..19878120 (25 bp)
ACTTTTGTTCCATATTCATCACAAT
LOC_Os02g33450
OsAffx.2841.1.S1_at--1011--2931Chr02:19878148..19878172 (25 bp)
AAGGCATCTTTTAAATCTCATGCTA
LOC_Os02g33450
OsAffx.2841.1.S1_at--1115--3051Chr02:19878161..19878185 (25 bp)
AATCTCATGCTAATACACTATAGTA
LOC_Os02g33450
OsAffx.2841.1.S1_at--400--10211Chr02:19878188..19878212 (25 bp)
TATTATGGTCAAAGTGACACCTTGA
LOC_Os02g33450
OsAffx.2841.1.S1_at--1156--7351Chr02:19878201..19878367 (25 bp)
GTGACACCTTGAAAACTACGTTCTC
LOC_Os02g33450
OsAffx.2841.1.S1_at--552--10751NONE
TTGAAAACTACGTTCTCCCATCTTG
NONE
Target Sequence 
TTGACAGTGTGTGGAGCAGAGCATTTACGTCTTACTTTATTGCTTTGTACAGTTATGATATGTCAATCCCTTTGATACAA
AAGACGTTCCACTTTTGTTCCATATTCATCACAATACAATTATGGGGGCATATTTATCATAAAAGGCATCTTTTAAATCT
CATGCTAATACACTATAGTAAATATTATGGTCAAAGTGACACCTTGAAAACTACGTTCTCCCATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis