Browse Element(s) Details


OsAffx.28474.1.S1_at

Description tigr:9635.m01615
TID=OsAffx.28474.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1618011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16150Os.57294.1.S1_at10/117+9404144..9405448expressed protein
LOC_Os07g16160NANA7+9419714..9421604retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16170Os.50619.1.S1_at1/117+9423694..9425092hypothetical protein
LOC_Os07g16180OsAffx.28474.1.S1_at11/117+9428038..9428277hypothetical protein
LOC_Os07g16190Os.45902.1.A1_x_at4/117+9433409..9436160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16190OsAffx.10222.1.S1_x_at2/117+9433409..9436160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16190Os.56372.1.S1_at1/117+9433409..9436160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g16210OsAffx.16290.2.A1_at11/117+9453245..9454848hypothetical protein
LOC_Os07g16210OsAffx.30582.1.S1_s_at4/117+9453245..9454848hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28474.1.S1_at--288--4711Chr07:9428195..9428219 (25 bp)
GCGGCGACAGCAACCACAAGGGAGA
LOC_Os07g16180
OsAffx.28474.1.S1_at--482--3411Chr07:9428188..9428212 (25 bp)
CAGCAACCACAAGGGAGAGAGAATC
LOC_Os07g16180
OsAffx.28474.1.S1_at--758--8051Chr07:9428175..9428199 (25 bp)
GGAGAGAGAATCATCAACGGCCATA
LOC_Os07g16180
OsAffx.28474.1.S1_at--674--1331Chr07:9428141..9428165 (25 bp)
AGAGGGAGGCACAGCACGCGACAGA
LOC_Os07g16180
OsAffx.28474.1.S1_at--790--5271Chr07:9428116..9428140 (25 bp)
GAATGTCACGTGTTGGAGAGGCTCC
LOC_Os07g16180
OsAffx.28474.1.S1_at--978--751Chr07:9428114..9428138 (25 bp)
ATGTCACGTGTTGGAGAGGCTCCGC
LOC_Os07g16180
OsAffx.28474.1.S1_at--383--6031Chr07:9428101..9428125 (25 bp)
GAGAGGCTCCGCGTGGCACAGAACA
LOC_Os07g16180
OsAffx.28474.1.S1_at--524--3991Chr07:9428090..9428114 (25 bp)
CGTGGCACAGAACAGCGCGTGACAA
LOC_Os07g16180
OsAffx.28474.1.S1_at--990--2131Chr07:9428084..9428108 (25 bp)
ACAGAACAGCGCGTGACAAACAAAT
LOC_Os07g16180
OsAffx.28474.1.S1_at--67--5491Chr07:9428081..9428105 (25 bp)
GAACAGCGCGTGACAAACAAATTAG
LOC_Os07g16180
OsAffx.28474.1.S1_at--641--4551Chr07:9428076..9428100 (25 bp)
GCGCGTGACAAACAAATTAGAGTTA
LOC_Os07g16180
Target Sequence 
GCGGCGACAGCAACCACAAGGGAGAGAGAATCATCAACGGCCATAGCGTGGGGAAGAGGGAGGCACAGCACGCGACAGAG
AATGTCACGTGTTGGAGAGGCTCCGCGTGGCACAGAACAGCGCGTGACAAACAAATTAGAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis