Browse Element(s) Details


OsAffx.28489.1.S1_at

Description tigr:9635.m01740
TID=OsAffx.28489.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1730011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17270Os.49134.2.S1_x_at11/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17270Os.49134.2.S1_at11/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17270Os.31662.1.S1_at1/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17270Os.55230.1.S1_x_at1/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17280Os.49134.2.S1_x_at8/117+10203325..10207221Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17280Os.49134.2.S1_at6/117+10203325..10207221Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17290Os.34131.1.S1_s_at9/117+10209817..10211952hAT family dimerisation domain containing protein
LOC_Os07g17300OsAffx.28489.1.S1_at11/117+10216583..10219038hypothetical protein
LOC_Os07g17310Os.53898.1.S1_at11/117+10221827..10224447senescence-associated protein, putative, expressed
LOC_Os07g17320OsAffx.16308.1.S1_at11/117+10228390..10229262hypothetical protein
LOC_Os07g17320Os.55138.1.S1_x_at3/117+10228390..10229262hypothetical protein
LOC_Os07g17330Os.11195.1.S1_at11/117+10230137..10230977senescence-associated protein, putative, expressed
LOC_Os07g17340Os.47463.1.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17340Os.14491.2.S1_x_at3/117+10234702..10239846transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g17350NANA7+10241353..10243527transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28489.1.S1_at--312--371Chr07:10218627..10218647 (21 bp)
ATCAAGTTCCTTTGAGCACGGACGA
LOC_Os07g17300
OsAffx.28489.1.S1_at--666--1491Chr07:10218534..10218633 (25 bp)
AGCACGGACGATCTTCTATCCAAGA
LOC_Os07g17300
OsAffx.28489.1.S1_at--408--4971Chr07:10218393..10218417 (25 bp)
GCATCATCTTTGTGTTTGGTGTCAT
LOC_Os07g17300
OsAffx.28489.1.S1_at--77--7751Chr07:10218376..10218400 (25 bp)
GGTGTCATTCTTGGATAACCTGAGT
LOC_Os07g17300
OsAffx.28489.1.S1_at--942--191Chr07:10218134..10218158 (25 bp)
ATTTGTGACTTTCTCCAATGGCTAC
LOC_Os07g17300
OsAffx.28489.1.S1_at--1122--3191Chr07:10218119..10218143 (25 bp)
CAATGGCTACCCGTTGTCAAAAGAT
LOC_Os07g17300
OsAffx.28489.1.S1_at--115--10191Chr07:10218095..10218114 (20 bp)
TATACGATTTCTTCATGAGGCACTA
LOC_Os07g17300
OsAffx.28489.1.S1_at--849--1451Chr07:10216748..10216772 (25 bp)
AGAAGAGCCACCTGAACCTAGGCCA
LOC_Os07g17300
OsAffx.28489.1.S1_at--147--5131Chr07:10216714..10216738 (25 bp)
GCACAAGTCACGTTTTACTCGCAAT
LOC_Os07g17300
OsAffx.28489.1.S1_at--302--9911Chr07:10216699..10216723 (25 bp)
TACTCGCAATTGACACTGCTCCGTG
LOC_Os07g17300
OsAffx.28489.1.S1_at--499--8191Chr07:10216635..10216659 (25 bp)
GGAAGCATCTGTGGGCTCGACAATT
LOC_Os07g17300
Target Sequence 
ATCAAGTTCCTTTGAGCACGGACGATCTTCTATCCAAGATCAAATCTCTGTATGCAAACAATCAAGAAAATCATGGAGAA
AGCTCTAGTTATAGAAGCATCCAGTATCCAAGAAACCATATCCTCCAAGATACAAAAGTGGCAATAGACGAGTATGCATC
ATCTTTGTGTTTGGTGTCATTCTTGGATAACCTGAGTTTAAGGGAGAAGCATAGTGATCCAGTAATACAACAACCTTCTG
ATGTTCCAAATGATGAAAGAACTTTATTTGTGACTTTCTCCAATGGCTACCCGTTGTCAAAAGATGAACTATACGATTTC
TTCATGAGGCACTACGGAGATATTGAAGATATAACCATAGAAGAGCCACCTGAACCTAGGCCACCACTCTTTGCACAAGT
CACGTTTTACTCGCAATTGACACTGCTCCGTGTCCTTGATGGCAACAAGAGAGTCAAATTCATGACAAGAGGGAAGCATC
TGTGGGCTCGACAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis