Browse Element(s) Details


OsAffx.28511.1.S1_at

Description tigr:9635.m01883
TID=OsAffx.28511.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1867011/11hypothetical protein
LOC_Os07g186601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18640NANA7+11019166..11020719retrotransposon, putative, centromere-specific
LOC_Os07g18660OsAffx.21039.2.S1_at11/117+11024900..11029628hypothetical protein
LOC_Os07g18660OsAffx.28511.1.S1_at1/117+11024900..11029628hypothetical protein
LOC_Os07g18670OsAffx.28511.1.S1_at11/117+11031928..11033821hypothetical protein
LOC_Os07g18680OsAffx.28512.2.S1_s_at11/117+11036307..11038689hypothetical protein
LOC_Os07g18680OsAffx.28512.1.S1_at10/117+11036307..11038689hypothetical protein
LOC_Os07g18690Os.45173.1.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18690OsAffx.31892.2.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18700OsAffx.29376.1.S1_x_at1/117+11049242..11052644plasma membrane sulphate transporter, putative
LOC_Os07g18710Os.30965.1.S1_at11/117+11058618..11060085F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28511.1.S1_at--662--1531Chr07:11032891..11032915 (25 bp)
AGCATCCGGGTAATCAGTGCACCTA
LOC_Os07g18670
OsAffx.28511.1.S1_at--1006--5711Chr07:11032866..11032890 (25 bp)
GACTGCACATATTGGGCATCCTGCC
LOC_Os07g18670
OsAffx.28511.1.S1_at--283--9172Chr07:11032845..11032869 (25 bp)
TGCCCAGCTTCATCTCTAGACTTGA
LOC_Os07g18670
OsAffx.28511.1.S1_at--718--8151Chr07:11032550..11032574 (25 bp)
GGAAATGCCTCCTGTTAGCGTGTCA
LOC_Os07g18670
OsAffx.28511.1.S1_at--216--9991Chr07:11032535..11032559 (25 bp)
TAGCGTGTCAGTGCCCACTGTGAAG
LOC_Os07g18670
OsAffx.28511.1.S1_at--964--5331Chr07:11032514..11032538 (25 bp)
GAAGATTTTGGTTCTCCAGTCTGTT
LOC_Os07g18670
OsAffx.28511.1.S1_at--1025--1131Chr07:11032497..11032521 (25 bp)
AGTCTGTTGGTCCAAACCTTGCTGC
LOC_Os07g18670
OsAffx.28511.1.S1_at--221--4751Chr07:11032474..11032498 (25 bp)
GCTGTTGTCAACATCCTCAAATATT
LOC_Os07g18670
OsAffx.28511.1.S1_at--830--8911Chr07:11032243..11032267 (25 bp)
TGAGCTTCGCAATTATGTCCCTGGA
LOC_Os07g18670
OsAffx.28511.1.S1_at--680--5791Chr07:11032159..11032183 (25 bp)
GACGCCCGTGGTTAACTTTGCCAAG
LOC_Os07g18670
OsAffx.28511.1.S1_at--629--6311Chr07:11032057..11032081 (25 bp)
GATGACTAATCAACGCAGGAGGCTG
LOC_Os07g18670
Target Sequence 
AGCATCCGGGTAATCAGTGCACCTAGACTGCACATATTGGGCATCCTGCCCAGCTTCATCTCTAGACTTGAGATTGGGAC
TGTGGTTATTCAGGAAATGCCTCCTGTTAGCGTGTCAGTGCCCACTGTGAAGATTTTGGTTCTCCAGTCTGTTGGTCCAA
ACCTTGCTGCTGTTGTCAACATCCTCAAATATTTTCCCTGCTTGGAGAAGTTGTACATCAAAATAACTTTGCAAAGTACT
GCAAAAAATGAGCTTCGCAATTATGTCCCTGGACCTGTTCACTGCCTGGAACACCATCTTAAGAGTATAGTGCTCAAAAG
ATATCAAGCGAAGACGCCCGTGGTTAACTTTGCCAAGTTCTTCATTTTGAATGCAAAAGTTCTTAAGGTAATGAAATTTG
GTGTCCAAGACATCACTCGTCAGAATGAGAAATGGATGACTAATCAACGCAGGAGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis