Browse Element(s) Details


OsAffx.28512.2.S1_s_at

Description gb:XM_353872.1
DB_XREF= gi:34915535
GEN=P0045F02.24
TID=OsAffx.28512.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1868011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18640NANA7+11019166..11020719retrotransposon, putative, centromere-specific
LOC_Os07g18660OsAffx.21039.2.S1_at11/117+11024900..11029628hypothetical protein
LOC_Os07g18660OsAffx.28511.1.S1_at1/117+11024900..11029628hypothetical protein
LOC_Os07g18670OsAffx.28511.1.S1_at11/117+11031928..11033821hypothetical protein
LOC_Os07g18680OsAffx.28512.2.S1_s_at11/117+11036307..11038689hypothetical protein
LOC_Os07g18680OsAffx.28512.1.S1_at10/117+11036307..11038689hypothetical protein
LOC_Os07g18690Os.45173.1.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18690OsAffx.31892.2.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18700OsAffx.29376.1.S1_x_at1/117+11049242..11052644plasma membrane sulphate transporter, putative
LOC_Os07g18710Os.30965.1.S1_at11/117+11058618..11060085F-box domain containing protein, expressed
LOC_Os07g18720Os.37765.1.S1_at10/117+11063192..11073589expressed protein
LOC_Os07g18720Os.11874.1.S1_s_at6/117+11063192..11073589expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28512.2.S1_s_at--713--3471Chr07:11036477..11036501 (25 bp)
CATTGGCACCAACAAACAAAACCTT
LOC_Os07g18680
OsAffx.28512.2.S1_s_at--542--2371Chr07:11036459..11036483 (25 bp)
AAACCTTCCGGAGTTCCTATCATAG
LOC_Os07g18680
OsAffx.28512.2.S1_s_at--218--9291Chr07:11036453..11036477 (25 bp)
TCCGGAGTTCCTATCATAGAAGGTT
LOC_Os07g18680
OsAffx.28512.2.S1_s_at--483--7871Chr07:11036432..11036456 (25 bp)
GGTTATTGGGCTTTACATGGAGTGC
LOC_Os07g18680
OsAffx.28512.2.S1_s_at--1073--2111Chr07:11036418..11036442 (25 bp)
ACATGGAGTGCCTCTATGGCACAAG
LOC_Os07g18680
OsAffx.28512.2.S1_s_at--412--5131Chr07:11036400..11036424 (25 bp)
GCACAAGAATGTCGAAGCCACCATA
LOC_Os07g18680
OsAffx.28512.2.S1_s_at--688--2651Chr07:11036386..11036410 (25 bp)
AAGCCACCATAGACTTCGACGTGTT
LOC_Os07g18680
OsAffx.28512.2.S1_s_at--362--5671Chr07:11036375..11036399 (25 bp)
GACTTCGACGTGTTTGAACTCCCTA
LOC_Os07g18680
OsAffx.28512.2.S1_s_at--642--6851Chr07:11036364..11036388 (25 bp)
GTTTGAACTCCCTAACTTCGATCTT
LOC_Os07g18680
OsAffx.28512.2.S1_s_at--1125--2511Chr07:11036351..11036375 (25 bp)
AACTTCGATCTTCTGATTTGCCATC
LOC_Os07g18680
OsAffx.28512.2.S1_s_at--804--431Chr07:11036344..11036368 (25 bp)
ATCTTCTGATTTGCCATCCCACAAA
LOC_Os07g18680
Target Sequence 
CATTGGCACCAACAAACAAAACCTTCCGGAGTTCCTATCATAGAAGGTTATTGGGCTTTACATGGAGTGCCTCTATGGCA
CAAGAATGTCGAAGCCACCATAGACTTCGACGTGTTTGAACTCCCTAACTTCGATCTTCTGATTTGCCATCCCACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28512.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis