Browse Element(s) Details


Os.37765.1.S1_at

Description gb:BI810091
DB_XREF= gi:15857279
DB_XREF=I002H10
CLONE=I002H10
TID=Os.37765.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.37765 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0045F02.16 (P0045F02.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1872010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18680OsAffx.28512.2.S1_s_at11/117+11036307..11038689hypothetical protein
LOC_Os07g18680OsAffx.28512.1.S1_at10/117+11036307..11038689hypothetical protein
LOC_Os07g18690Os.45173.1.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18690OsAffx.31892.2.S1_x_at1/117+11040107..11046107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18700OsAffx.29376.1.S1_x_at1/117+11049242..11052644plasma membrane sulphate transporter, putative
LOC_Os07g18710Os.30965.1.S1_at11/117+11058618..11060085F-box domain containing protein, expressed
LOC_Os07g18720Os.37765.1.S1_at10/117+11063192..11073589expressed protein
LOC_Os07g18720Os.11874.1.S1_s_at6/117+11063192..11073589expressed protein
LOC_Os07g18730OsAffx.21085.1.S1_at11/117+11075388..11078929retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18739NANA7+11083129..11083356NA
LOC_Os07g18750Os.11212.1.S1_at11/117+11088829..11089564Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g18760OsAffx.30226.4.S1_x_at3/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18760OsAffx.30226.4.S1_at1/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18760OsAffx.30226.1.S1_at1/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18760OsAffx.30226.1.S1_x_at1/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18770NANA7+11098469..11102512retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37765.1.S1_at--506--4411Chr07:11071851..11071875 (25 bp)
GCCAGTAAATCAGCATGCAATGCCG
LOC_Os07g18720
Os.37765.1.S1_at--898--9011Chr07:11071866..11071890 (25 bp)
TGCAATGCCGATACCTTCTCGGTGA
LOC_Os07g18720
Os.37765.1.S1_at--391--10591Chr07:11071881..11071905 (25 bp)
TTCTCGGTGAGCAAAGGCATCCTCC
LOC_Os07g18720
Os.37765.1.S1_at--949--2031Chr07:11071918..11072125 (25 bp)
ACTATCTTCGGCTCTGGGCTGGCTG
LOC_Os07g18720
Os.37765.1.S1_at--634--4711Chr07:11072118..11072142 (25 bp)
GCTGGCTGGCTATCACGACTACAAA
LOC_Os07g18720
Os.37765.1.S1_at--1135--1811Chr07:11072132..11072156 (25 bp)
ACGACTACAAATCTTCGGCCTTTGC
LOC_Os07g18720
Os.37765.1.S1_at--217--9451Chr07:11072146..11072170 (25 bp)
TCGGCCTTTGCCAGGCTGTGACAGA
LOC_Os07g18720
Os.37765.1.S1_at--1031--3171Chr07:11072192..11072490 (25 bp)
CAATTGGTGGGTTGATCTGCTTTTA
LOC_Os07g18720
Os.37765.1.S1_at--674--5511Chr07:11072542..11072566 (25 bp)
GAAAATCTAATCACTGAACATCCTG
LOC_Os07g18720
Os.37765.1.S1_at--1034--5471Chr07:11072557..11072581 (25 bp)
GAACATCCTGAAGACTTCCGTGGTT
LOC_Os07g18720
Os.37765.1.S1_at--561--7371NONE
GTGAGACACACAGGGAAATTCCATT
NONE
Target Sequence 
GCCAGTAAATCAGCATGCAATGCCGATACCTTCTCGGTGAGCAAAGGCATCCTCCTCCAGTCCCCCGACTATCTTCGGCT
CTGGGCTGGCTGGCTATCACGACTACAAATCTTCGGCCTTTGCCAGGCTGTGACAGAGGTTGAGGAAGAAGAACATGGCA
ATTGGTGGGTTGATCTGCTTTTAGGAAAGGCTTATTCTGATTGGGGCCATATCAGTGATGCTGTTGCTGTTTATGAAAAT
CTAATCACTGAACATCCTGAAGACTTCCGTGGTTATTTGGCTAAGGGAATCATATTAAAGGAAAATGGTAAATCAGGTGA
AGCAGAGAGAATGTTTATTCAGGCCAAATTTTTCGCACCTGATGCAGCGAAGGCACTAGTTGATCGATATGCACAAAGGT
AGCGTGAGACACACAGGGAAATTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis