Browse Element(s) Details


Os.11212.1.S1_at

Description gb:AK105204.1
DB_XREF= gi:32990413
TID=Os.11212.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0045F02.11 (P0045F02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F06, full insert sequence.
FL= gb:AK105204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1875011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18720Os.37765.1.S1_at10/117+11063192..11073589expressed protein
LOC_Os07g18720Os.11874.1.S1_s_at6/117+11063192..11073589expressed protein
LOC_Os07g18730OsAffx.21085.1.S1_at11/117+11075388..11078929retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18739NANA7+11083129..11083356NA
LOC_Os07g18750Os.11212.1.S1_at11/117+11088829..11089564Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g18760OsAffx.30226.4.S1_x_at3/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18760OsAffx.30226.4.S1_at1/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18760OsAffx.30226.1.S1_at1/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18760OsAffx.30226.1.S1_x_at1/117+11092093..11094573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18770NANA7+11098469..11102512retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18780OsAffx.23007.1.S1_at11/117+11106289..11111592retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18780OsAffx.30226.2.S1_s_at8/117+11106289..11111592retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18780OsAffx.442.1.S1_x_at4/117+11106289..11111592retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18780OsAffx.442.1.S1_at2/117+11106289..11111592retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18780OsAffx.30226.2.S1_x_at2/117+11106289..11111592retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0009627biological_processsystemic acquired resistance
GO:0005319molecular_functionlipid transporter activity
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11212.1.S1_at--1071--4551Chr07:11089028..11089052 (25 bp)
GCGCCGTGTGCAACATGAGCAACGA
LOC_Os07g18750
Os.11212.1.S1_at--820--1871Chr07:11089052..11089076 (25 bp)
ACGAGTTCATGAAGTGCCAGCCGGC
LOC_Os07g18750
Os.11212.1.S1_at--482--10491Chr07:11089148..11089172 (25 bp)
TTAACTGCCTCTGCTCCTACAAGAA
LOC_Os07g18750
Os.11212.1.S1_at--713--3371Chr07:11089242..11089266 (25 bp)
CACCATGCCGGCTAACTGCTAATAA
LOC_Os07g18750
Os.11212.1.S1_at--524--3711Chr07:11089272..11089296 (25 bp)
CTACTGTTTTACTGCCAAGATTTGC
LOC_Os07g18750
Os.11212.1.S1_at--87--1891Chr07:11089319..11089343 (25 bp)
ACGTACGTAATATGTGTGCCTCCTA
LOC_Os07g18750
Os.11212.1.S1_at--237--9251Chr07:11089339..11089363 (25 bp)
TCCTACTCCTAGCTTGCGTTTGATA
LOC_Os07g18750
Os.11212.1.S1_at--593--6471Chr07:11089404..11089428 (25 bp)
GATAGCCTAGCTGTATGACAACTGT
LOC_Os07g18750
Os.11212.1.S1_at--1112--6911Chr07:11089427..11089451 (25 bp)
GTATGTTCTTGTCTTATGCTTGTGT
LOC_Os07g18750
Os.11212.1.S1_at--269--8431Chr07:11089499..11089523 (25 bp)
GGCCGGTTAATAGTGCTTGTTGCAT
LOC_Os07g18750
Os.11212.1.S1_at--421--4931Chr07:11089513..11089537 (25 bp)
GCTTGTTGCATTGATCGCATGCCTA
LOC_Os07g18750
Target Sequence 
GCGCCGTGTGCAACATGAGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGACGTCGAACCCGACGACGAAC
CCGTCGGCGGGCTGCTGCTCGGCGCTGTCGCACGCCGACCTTAACTGCCTCTGCTCCTACAAGAACTCGCCGTGGCTCAG
CATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAG
TTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAAGGACATAACGTACGTAATATGTGTGCCTCCTACTCC
TAGCTTGCGTTTGATATAGAAAATTAATAGCATAAAATGGCTAGAACTGCTACAGGGATAGCCTAGCTGTATGACAACTG
TATGTTCTTGTCTTATGCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTA
ATAGTGCTTGTTGCATTGATCGCATGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis