Browse Element(s) Details


OsAffx.28592.1.S1_at

Description tigr:9635.m02496
TID=OsAffx.28592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g163402/11hypothetical protein
LOC_Os10g345202/11Thioredoxin-like protein 4A, putative, expressed
LOC_Os01g249401/11Poly synthetase 2, putative
LOC_Os02g241341/11Vacuolar protein-sorting protein 45 homolog, putative, expressed
LOC_Os01g346301/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g045201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16320NANA6+9297392..9303352retrotransposon protein, putative, unclassified
LOC_Os06g16330Os.20348.1.S1_at11/116+9314992..9322904BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g16330Os.52743.1.S1_at11/116+9314992..9322904BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g16340OsAffx.15456.1.S1_at11/116+9323263..9324420hypothetical protein
LOC_Os06g16340OsAffx.28592.1.S1_at2/116+9323263..9324420hypothetical protein
LOC_Os06g16340OsAffx.12284.1.S1_x_at1/116+9323263..9324420hypothetical protein
LOC_Os06g16350Os.1131.1.S1_at11/116+9325054..9327207Peroxidase 11 precursor, putative, expressed
LOC_Os06g16350Os.1131.2.S1_x_at11/116+9325054..9327207Peroxidase 11 precursor, putative, expressed
LOC_Os06g16360OsAffx.15457.1.S1_at11/116+9332214..9332864hypothetical protein
LOC_Os06g16370Os.1189.1.S1_at11/116+9335377..9337570Hd1, putative, expressed
LOC_Os06g16380NANA6+9348328..9349580hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006471biological_processprotein amino acid ADP-ribosylation
GO:0006886biological_processintracellular protein transport
GO:0007067biological_processmitosis
GO:0009306biological_processprotein secretion
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005634cellular_componentnucleus
GO:0005681cellular_componentspliceosome complex
GO:0005737cellular_componentcytoplasm
GO:0005802cellular_componentGolgi trans face
GO:0005829cellular_componentcytosol
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0003677molecular_functionDNA binding
GO:0003824molecular_functioncatalytic activity
GO:0003950molecular_functionNAD+ ADP-ribosyltransferase activity
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28592.1.S1_at--327--7651Chr07:14910927..14911149 (25 bp)
GGGATGCCTAGTCATGGCAAGTTAT
NONE
OsAffx.28592.1.S1_at--458--3493Chr11:28136252..28136273 (22 bp)
CATGGCAAGTTATGTGCGAAGGTAT
NONE
OsAffx.28592.1.S1_at--259--6799Chr10:18083264..18083287 (24 bp)
GTTATGTGCGAAGGTATATGTGGAT
LOC_Os10g34520
OsAffx.28592.1.S1_at--658--8339Chr11:5028023..5028047 (25 bp)
GGCTGAGCACAAAAGTGTTGCCTAC
NONE
OsAffx.28592.1.S1_at--465--2872Chr10:18082748..18082772 (25 bp)
AAGTGTTGCCTACGTAGCATGCCAC
NONE
OsAffx.28592.1.S1_at--270--4451Chr07:14910861..14910885 (25 bp)
GCCTACGTAGCATGCCACATTGGTG
NONE
OsAffx.28592.1.S1_at--611--3312Chr11:18073358..18073381 (24 bp)
CACATTGGTGGTCAAACATGGTCAA
NONE
OsAffx.28592.1.S1_at--494--2392Chr07:6140688..6140712 (25 bp)
AAACATGGTCAAAGGACGATTGGAC
NONE
OsAffx.28592.1.S1_at--556--98128Chr10:18083372..18083425 (25 bp)
TACATTAAACCAAGTTCACGGACCT
LOC_Os10g34520
OsAffx.28592.1.S1_at--557--2814Chr10:18082669..18082693 (25 bp)
AAGTTCACGGACCTAAACGTGCAAT
NONE
OsAffx.28592.1.S1_at--422--38912Chr11:18791746..18791769 (24 bp)
CGGACCTAAACGTGCAATTTTCAAG
NONE
Target Sequence 
GGGATGCCTAGTCATGGCAAGTTATGTGCGAAGGTATATGTGGATGGGGCTGAGCACAAAAGTGTTGCCTACGTAGCATG
CCACATTGGTGGTCAAACATGGTCAAAGGACGATTGGACCGGGGGTGGTACATTAAACCAAGTTCACGGACCTAAACGTG
CAATTTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis