Browse Element(s) Details


OsAffx.28602.1.S1_at

Description tigr:9635.m02563
TID=OsAffx.28602.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2662011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26610Os.16323.2.S1_x_at11/117+15337303..15349470phosphoglucomutase, putative, expressed
LOC_Os07g26610Os.16323.1.S1_at7/117+15337303..15349470phosphoglucomutase, putative, expressed
LOC_Os07g26620OsAffx.28602.1.S1_at11/117+15355679..15356019hypothetical protein
LOC_Os07g26630Os.8118.1.S1_at11/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26630Os.44151.1.S1_x_at3/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26630Os.31191.2.S1_x_at1/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26640Os.44151.1.S1_x_at11/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26640Os.31191.2.S1_x_at1/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26650OsAffx.28603.1.S1_at11/117+15374237..15374482hypothetical protein
LOC_Os07g26660Os.31191.2.S1_x_at11/117+15375222..15376595expressed protein
LOC_Os07g26660Os.31191.1.S1_at10/117+15375222..15376595expressed protein
LOC_Os07g26660Os.55453.1.S1_at1/117+15375222..15376595expressed protein
LOC_Os07g26660Os.44151.1.S1_x_at1/117+15375222..15376595expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28602.1.S1_at--153--9171Chr07:15355723..15355747 (25 bp)
TGCCCACTTGCCCAGTGGACTAGTG
LOC_Os07g26620
OsAffx.28602.1.S1_at--1139--4151Chr07:15355725..15355749 (25 bp)
CCCACTTGCCCAGTGGACTAGTGGA
LOC_Os07g26620
OsAffx.28602.1.S1_at--572--8531Chr07:15355738..15355762 (25 bp)
TGGACTAGTGGAGCATGAGGCTTCA
LOC_Os07g26620
OsAffx.28602.1.S1_at--865--5691Chr07:15355740..15355764 (25 bp)
GACTAGTGGAGCATGAGGCTTCAGC
LOC_Os07g26620
OsAffx.28602.1.S1_at--756--2031Chr07:15355741..15355765 (25 bp)
ACTAGTGGAGCATGAGGCTTCAGCG
LOC_Os07g26620
OsAffx.28602.1.S1_at--663--5911Chr07:15355748..15355772 (25 bp)
GAGCATGAGGCTTCAGCGGCTACGA
LOC_Os07g26620
OsAffx.28602.1.S1_at--597--4991Chr07:15355750..15355774 (25 bp)
GCATGAGGCTTCAGCGGCTACGAGA
LOC_Os07g26620
OsAffx.28602.1.S1_at--1073--3511Chr07:15355751..15355775 (25 bp)
CATGAGGCTTCAGCGGCTACGAGAG
LOC_Os07g26620
OsAffx.28602.1.S1_at--798--911Chr07:15355755..15355779 (25 bp)
AGGCTTCAGCGGCTACGAGAGGCGG
LOC_Os07g26620
OsAffx.28602.1.S1_at--170--4911Chr07:15355757..15355781 (25 bp)
GCTTCAGCGGCTACGAGAGGCGGCT
LOC_Os07g26620
OsAffx.28602.1.S1_at--628--9651Chr07:15355760..15355784 (25 bp)
TCAGCGGCTACGAGAGGCGGCTGGG
LOC_Os07g26620
Target Sequence 
TGCCCACTTGCCCAGTGGACTAGTGGAGCATGAGGCTTCAGCGGCTACGAGAGGCGGCTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis