Browse Element(s) Details


OsAffx.28603.1.S1_at

Description gb:NM_187083.1
DB_XREF= gi:34901251
TID=OsAffx.28603.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0475E07.35), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2665011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26610Os.16323.2.S1_x_at11/117+15337303..15349470phosphoglucomutase, putative, expressed
LOC_Os07g26610Os.16323.1.S1_at7/117+15337303..15349470phosphoglucomutase, putative, expressed
LOC_Os07g26620OsAffx.28602.1.S1_at11/117+15355679..15356019hypothetical protein
LOC_Os07g26630Os.8118.1.S1_at11/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26630Os.44151.1.S1_x_at3/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26630Os.31191.2.S1_x_at1/117+15357266..15358697Aquaporin PIP2.2, putative, expressed
LOC_Os07g26640Os.44151.1.S1_x_at11/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26640Os.31191.2.S1_x_at1/117+15367441..15368473Aquaporin PIP2.2, putative, expressed
LOC_Os07g26650OsAffx.28603.1.S1_at11/117+15374237..15374482hypothetical protein
LOC_Os07g26660Os.31191.2.S1_x_at11/117+15375222..15376595expressed protein
LOC_Os07g26660Os.31191.1.S1_at10/117+15375222..15376595expressed protein
LOC_Os07g26660Os.55453.1.S1_at1/117+15375222..15376595expressed protein
LOC_Os07g26660Os.44151.1.S1_x_at1/117+15375222..15376595expressed protein
LOC_Os07g26670OsAffx.22369.1.S1_at11/117+15384182..15384572hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28603.1.S1_at--988--10051Chr07:15374372..15374396 (25 bp)
TAGTCGTCGGACAGCGGTGATCTAC
LOC_Os07g26650
OsAffx.28603.1.S1_at--321--1151Chr07:15374371..15374395 (25 bp)
AGTCGTCGGACAGCGGTGATCTACA
LOC_Os07g26650
OsAffx.28603.1.S1_at--1047--4011Chr07:15374368..15374392 (25 bp)
CGTCGGACAGCGGTGATCTACACAA
LOC_Os07g26650
OsAffx.28603.1.S1_at--904--7171Chr07:15374367..15374391 (25 bp)
GTCGGACAGCGGTGATCTACACAAG
LOC_Os07g26650
OsAffx.28603.1.S1_at--300--3951Chr07:15374365..15374389 (25 bp)
CGGACAGCGGTGATCTACACAAGAA
LOC_Os07g26650
OsAffx.28603.1.S1_at--1015--2151Chr07:15374362..15374386 (25 bp)
ACAGCGGTGATCTACACAAGAAGGG
LOC_Os07g26650
OsAffx.28603.1.S1_at--126--1471Chr07:15374344..15374368 (25 bp)
AGAAGGGGATTTGCGCGGGCCGACA
LOC_Os07g26650
OsAffx.28603.1.S1_at--532--6131Chr07:15374315..15374339 (25 bp)
GAGGGAGGTGGCCTTGGCAGCCAAG
LOC_Os07g26650
OsAffx.28603.1.S1_at--912--991Chr07:15374292..15374316 (25 bp)
AGGATGGCGACGATAGGGTTGTGGC
LOC_Os07g26650
OsAffx.28603.1.S1_at--274--6631Chr07:15374275..15374299 (25 bp)
GTTGTGGCGGCGGTCATTGGACAGC
LOC_Os07g26650
OsAffx.28603.1.S1_at--998--8351Chr07:15374267..15374291 (25 bp)
GGCGGTCATTGGACAGCTGGTGGAT
LOC_Os07g26650
Target Sequence 
TAGTCGTCGGACAGCGGTGATCTACACAAGAAGGGGATTTGCGCGGGCCGACAGGGGGAGGGAGGTGGCCTTGGCAGCCA
AGGATGGCGACGATAGGGTTGTGGCGGCGGTCATTGGACAGCTGGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis