Browse Element(s) Details


OsAffx.28717.1.S1_at

Description tigr:9635.m03211
TID=OsAffx.28717.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY096593 putative pectinesterase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3266010/11L-ascorbate oxidase homolog precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32640OsAffx.16528.1.S1_at10/117+19465142..19466631hypothetical protein
LOC_Os07g32650Os.8529.1.S1_at11/117+19471599..19475361retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32650Os.50755.1.S1_at9/117+19471599..19475361retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32660OsAffx.28717.1.S1_at10/117+19490279..19496842L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g32660OsAffx.18522.1.S1_at1/117+19490279..19496842L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g32670Os.10614.1.S1_at11/117+19499139..19503463expressed protein
LOC_Os07g32680NANA7+19513254..19514608transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g32690Os.2235.3.S1_x_at10/117+19517780..19524609retrotransposon protein, putative, unclassified
LOC_Os07g32690Os.52007.1.S1_at1/117+19517780..19524609retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28717.1.S1_at--144--8371Chr07:19495407..19495431 (25 bp)
GGCGTGTTCTCTGTCGGGACCATCT
LOC_Os07g32660
OsAffx.28717.1.S1_at--974--4451Chr07:19495464..19495488 (25 bp)
GCCTACCTCCAGACGGCGGTGATGG
LOC_Os07g32660
OsAffx.28717.1.S1_at--706--7551Chr07:19495489..19495513 (25 bp)
GGGCCAGCTACAGGGACTACGTCGA
LOC_Os07g32660
OsAffx.28717.1.S1_at--837--5451Chr07:19495535..19495559 (25 bp)
GAACGAGGTGCAGTCGTGGCACATC
LOC_Os07g32660
OsAffx.28717.1.S1_at--913--9951Chr07:19495566..19495688 (25 bp)
TACGCCTTCTGGGTCGTTGGAATGG
LOC_Os07g32660
OsAffx.28717.1.S1_at--324--5571Chr07:19495696..19495720 (25 bp)
GAAATGGTCATCAGCGAGCAGGCAG
LOC_Os07g32660
OsAffx.28717.1.S1_at--868--2611Chr07:19495727..19495751 (25 bp)
AACCTGCGGGATGCCGTTTCGCGGT
LOC_Os07g32660
OsAffx.28717.1.S1_at--1115--6831NONE
GTTTCGCGGTACACTGTTCAGGTTT
NONE
OsAffx.28717.1.S1_at--545--1011Chr07:19496628..19496652 (25 bp)
AGGTTTACCCTAATTCATGGACTGC
LOC_Os07g32660
OsAffx.28717.1.S1_at--286--5731Chr07:19496647..19496671 (25 bp)
GACTGCGATCTACATGCCATTGGAC
LOC_Os07g32660
OsAffx.28717.1.S1_at--517--1171Chr07:19496715..19496739 (25 bp)
AGTACCTCGGGCAGCAGTTCTACCT
LOC_Os07g32660
Target Sequence 
GGCGTGTTCTCTGTCGGGACCATCTCCGACAGCCCCTCCGGCGGCGGCGGCGGCGGCGCCTACCTCCAGACGGCGGTGAT
GGGGGCCAGCTACAGGGACTACGTCGAGATCGTGTTCGAGAACCCCGAGAACGAGGTGCAGTCGTGGCACATCGACGGCT
ACGCCTTCTGGGTCGTTGGAATGGATGGAGGGAAATGGTCATCAGCGAGCAGGCAGGGCTACAACCTGCGGGATGCCGTT
TCGCGGTACACTGTTCAGGTTTACCCTAATTCATGGACTGCGATCTACATGCCATTGGACAACGTGGGCATGTGGAACGT
CCGGTCGGAGAACTGGGCGAGGCAGTACCTCGGGCAGCAGTTCTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis