Browse Element(s) Details


OsAffx.28798.2.S1_s_at

Description tigr:9632.m04062
TID=OsAffx.28798.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3737011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37340NANA7+22365611..22365910hypothetical protein
LOC_Os07g37350Os.5797.1.S1_at11/117+22368586..22370786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g37360Os.51851.1.S1_at4/117+22384653..22385267transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g37370OsAffx.28798.2.S1_s_at11/117+22388990..22390874hypothetical protein
LOC_Os07g37370OsAffx.28798.1.S1_at8/117+22388990..22390874hypothetical protein
LOC_Os07g37380NANA7+22402345..22403543expressed protein
LOC_Os07g37390OsAffx.5560.1.S1_at9/117+22408440..22409259hypothetical protein
LOC_Os07g37400Os.8724.1.S1_at11/117+22409532..22411377F-box domain containing protein, expressed
LOC_Os07g37410OsAffx.28340.3.S1_x_at11/117+22413096..22413977hypothetical protein
LOC_Os07g37410OsAffx.28340.1.S1_x_at1/117+22413096..22413977hypothetical protein
LOC_Os07g37420OsAffx.5561.1.S1_s_at11/117+22414480..22415518Short-chain type dehydrogenase/reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28798.2.S1_s_at--413--6412Chr07:22390469..22390493 (25 bp)
GATCTGTTGGCTCATCAAGTCCGAC
LOC_Os07g37370
OsAffx.28798.2.S1_s_at--129--8493Chr07:22390476..22390500 (25 bp)
TGGCTCATCAAGTCCGACGCGGAGT
LOC_Os07g37370
OsAffx.28798.2.S1_s_at--612--5533Chr07:22390520..22390544 (25 bp)
GAAAAAGGCGATGCAGCAGCCGTCG
LOC_Os07g37370
OsAffx.28798.2.S1_s_at--772--553Chr07:22390592..22390616 (25 bp)
ATCCTCGAGCACACACAGGTGGAGA
LOC_Os07g37370
OsAffx.28798.2.S1_s_at--667--5533Chr07:22390615..22390639 (25 bp)
GAAAAATCAGAAGCCACCGAGAGCC
LOC_Os07g37370
OsAffx.28798.2.S1_s_at--1004--2112Chr07:22390697..22390721 (25 bp)
ACACGGAGTTTACCAGGAATTCAAG
LOC_Os07g37370
OsAffx.28798.2.S1_s_at--4--8213Chr07:22390712..22390736 (25 bp)
GGAATTCAAGTTCTGTGCATTGCTT
LOC_Os07g37370
OsAffx.28798.2.S1_s_at--455--133Chr07:22390759..22390783 (25 bp)
ATTCACTTTCAATTGCTACGTTCAC
LOC_Os07g37370
OsAffx.28798.2.S1_s_at--393--53Chr07:22390770..22390794 (25 bp)
ATTGCTACGTTCACAAGCCAGATTT
LOC_Os07g37370
OsAffx.28798.2.S1_s_at--187--3312Chr07:22390781..22390805 (25 bp)
CACAAGCCAGATTTACCAGGAGTTT
LOC_Os07g37370
OsAffx.28798.2.S1_s_at--152--4352Chr07:22390796..22390820 (25 bp)
CCAGGAGTTTAGATACAGAGATCAA
LOC_Os07g37370
Target Sequence 
GATCTGTTGGCTCATCAAGTCCGACGCGGAGTCGGTGTTTTTGTGCGAGGAGAAAAAGGCGATGCAGCAGCCGTCGTCCA
CGTCTACGCAGCCGCACGCGTCGAGGAAGCAGCAGCCGGTGTCATCCTCGAGCACACACAGGTGGAGAAAAATCAGAAGC
CACCGAGAGCCACTGCTTCTGTTCTGTTCACGTGAATTAATTTTCACGTACGGTTGGAAATTTGTGACACACGGAGTTTA
CCAGGAATTCAAGTTCTGTGCATTGCTTGGTTCTGTCGAGGTGAACCCAAATTCACTTTCAATTGCTACGTTCACAAGCC
AGATTTACCAGGAGTTTAGATACAGAGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28798.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis