Browse Element(s) Details


OsAffx.28853.1.S1_at

Description tigr:9635.m04116
TID=OsAffx.28853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glycerophosphodiester phosphodiesterase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4115011/11glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41110NANA7+24601549..24607538retrotransposon protein, putative, unclassified
LOC_Os07g41120Os.52218.1.S1_x_at11/117+24608506..24611994RNA recognition motif family protein
LOC_Os07g41140Os.12644.1.S1_at11/117+24619369..24623214Leucine Rich Repeat family protein, expressed
LOC_Os07g41150OsAffx.28853.1.S1_at11/117+24626567..24628037glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os07g41160OsAffx.16669.1.S1_at11/117+24630624..24634572expressed protein
LOC_Os07g41170OsAffx.5590.1.S1_at11/117+24640597..24641572expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0031225cellular_componentanchored to membrane
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28853.1.S1_at--259--8631Chr07:24627335..24627359 (25 bp)
TGGTGGGCATCTACCCGGAGATCAA
LOC_Os07g41150
OsAffx.28853.1.S1_at--1011--9931Chr07:24627324..24627348 (25 bp)
TACCCGGAGATCAAGAACCCGGTGT
LOC_Os07g41150
OsAffx.28853.1.S1_at--48--7431Chr07:24627180..24627204 (25 bp)
GTGTTCATCCAGTCGTTCGCCCCGA
LOC_Os07g41150
OsAffx.28853.1.S1_at--1135--5071Chr07:24627086..24627110 (25 bp)
GCACCGAGGACACGAGCCAGTCCTA
LOC_Os07g41150
OsAffx.28853.1.S1_at--465--1871Chr07:24627075..24627099 (25 bp)
ACGAGCCAGTCCTACGACGAGGTGA
LOC_Os07g41150
OsAffx.28853.1.S1_at--674--1871Chr07:24627059..24627083 (25 bp)
ACGAGGTGACCTCGGACGAACACCT
LOC_Os07g41150
OsAffx.28853.1.S1_at--342--5491Chr07:24627042..24627066 (25 bp)
GAACACCTCGACTACATGAGGGAGT
LOC_Os07g41150
OsAffx.28853.1.S1_at--547--4091Chr07:24626948..24626972 (25 bp)
CGACGGACCTCGTCGCAAGGGCGCA
LOC_Os07g41150
OsAffx.28853.1.S1_at--981--9791Chr07:24626704..24626728 (25 bp)
TACACGTACCGGAACGAGAACCAGT
LOC_Os07g41150
OsAffx.28853.1.S1_at--371--7951Chr07:24626631..24626655 (25 bp)
GGATCAACGACGTCGGTGACCTCTT
LOC_Os07g41150
OsAffx.28853.1.S1_at--571--7751Chr07:24626617..24626641 (25 bp)
GGTGACCTCTTCACCGACTTTCCGG
LOC_Os07g41150
Target Sequence 
TGGTGGGCATCTACCCGGAGATCAAGAACCCGGTGTTCGTCAACCGGCAGGTGCGGTGGCGCGACGGCAAGAAGTTCGAG
GACAAGTTCGTGGCGGCGCTCAAGCGTCGCGGCTACGGCGGCCGGTACATGTCGCCGGCGTGGGCGGCGCGGCCGGTGTT
CATCCAGTCGTTCGCCCCGACGTCGCTCGTCTACGCCGCCGGCCTCACCGACTCCCCCATGGTGCTCCTCGTCGACGACA
CCACGGTGCGCACCGAGGACACGAGCCAGTCCTACGACGAGGTGACCTCGGACGAACACCTCGACTACATGAGGGAGTAC
GTCGTCGGCGTCGGGCCGTGGAAGGATACGGTGGTGCCGCCGACGACGGACAACAAGCTGGCGGCGCCGACGGACCTCGT
CGCAAGGGCGCACGCCAGGGGCTTGCAGGTGCACCCCTACACGTACCGGAACGAGAACCAGTTCCTGCACTTCAACTTCC
GGCAGGATCCGTACGCCGAGTACGACTACTGGATCAACGACGTCGGTGACCTCTTCACCGACTTTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis