Browse Element(s) Details


OsAffx.28867.1.S1_at

Description tigr:9635.m04208
TID=OsAffx.28867.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DC1 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4203011/11C1-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41980OsAffx.5605.1.S1_at11/117+25129482..25130304C1-like domain containing protein
LOC_Os07g41990NANA7+25134701..25135843hypothetical protein
LOC_Os07g42000OsAffx.29757.3.S1_x_at11/117+25137433..25140270hypothetical protein
LOC_Os07g42000OsAffx.29757.3.S1_at11/117+25137433..25140270hypothetical protein
LOC_Os07g42000OsAffx.29757.1.S1_x_at8/117+25137433..25140270hypothetical protein
LOC_Os07g42000OsAffx.29757.4.S1_x_at5/117+25137433..25140270hypothetical protein
LOC_Os07g42010Os.10827.1.S1_x_at8/117+25141234..25144983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42010Os.46055.2.S1_x_at5/117+25141234..25144983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.7.S1_s_at11/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.1.S1_s_at11/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.2.S1_x_at6/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42020OsAffx.25936.5.S1_x_at1/117+25147357..25149901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g42030OsAffx.28867.1.S1_at11/117+25155222..25156295C1-like domain containing protein
LOC_Os07g42040OsAffx.5605.1.S1_at11/117+25165349..25166065C1-like domain containing protein
LOC_Os07g42050NANA7+25169740..25173087retrotransposon protein, putative, unclassified
LOC_Os07g42060NANA7+25173707..25179863retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28867.1.S1_at--86--7211Chr07:25155479..25155503 (25 bp)
GTCGTGCGACCTTTGCAGGGAGAAT
LOC_Os07g42030
OsAffx.28867.1.S1_at--187--731Chr07:25155610..25155634 (25 bp)
ATGATATCCACATGGTCCCTTCATG
LOC_Os07g42030
OsAffx.28867.1.S1_at--1156--4451Chr07:25155648..25155672 (25 bp)
GCCTGCCGTGAAGATTTGGACCTTT
LOC_Os07g42030
OsAffx.28867.1.S1_at--921--7831Chr07:25155673..25155697 (25 bp)
GGTACTACCAGTGTGGCTTTTGTCT
LOC_Os07g42030
OsAffx.28867.1.S1_at--951--10491Chr07:25155700..25155724 (25 bp)
TTAAGCTACATATCCGTTGCGTCTC
LOC_Os07g42030
OsAffx.28867.1.S1_at--835--7491Chr07:25155736..25156123 (25 bp)
GTGGTGTCGAGCCTTGCACCAGCAA
LOC_Os07g42030
OsAffx.28867.1.S1_at--94--4791Chr07:25156125..25156149 (25 bp)
GCTGCCATCCGAACTACCAGTGATG
LOC_Os07g42030
OsAffx.28867.1.S1_at--973--1351Chr07:25156153..25156177 (25 bp)
AGAGCATTGCCATCGTTCGGCGGAG
LOC_Os07g42030
OsAffx.28867.1.S1_at--1025--5891Chr07:25156175..25156199 (25 bp)
GAGCTGCAGCTCTGGTATCACCAAG
LOC_Os07g42030
OsAffx.28867.1.S1_at--783--7851Chr07:25156188..25156212 (25 bp)
GGTATCACCAAGTTTCTCGTCAAGA
LOC_Os07g42030
OsAffx.28867.1.S1_at--1068--5511Chr07:25156211..25156235 (25 bp)
GAAAAGCTTCATGGTCGCGATTAAC
LOC_Os07g42030
Target Sequence 
GTCGTGCGACCTTTGCAGGGAGAATTGCCCCCGGGGAAACTTCGTGTACCGCTGCATCCAGTGCGCCTTCGACGTGCACC
CTCTCTGCATTTTGCTCCCGCAAACGATCCGTAGCCCGCTTCACCAGCAGCATGATATCCACATGGTCCCTTCATGGGGC
CGCTGCTCCGCCTGCCGTGAAGATTTGGACCTTTGGTACTACCAGTGTGGCTTTTGTCTGTTTAAGCTACATATCCGTTG
CGTCTCTGGCGCGCCAAGTGGTGTCGAGCCTTGCACCAGCAACGCTGCCATCCGAACTACCAGTGATGCTCAGAGCATTG
CCATCGTTCGGCGGAGCTGCAGCTCTGGTATCACCAAGTTTCTCGTCAAGAAAAGCTTCATGGTCGCGATTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis