Browse Element(s) Details


OsAffx.28910.1.S1_at

Description tigr:9635.m04535
TID=OsAffx.28910.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4515011/11hypothetical protein
LOC_Os07g301501/11Adenine phosphoribosyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45110OsAffx.13097.1.S1_s_at11/117+26923497..26926570transposon protein, putative, Mutator sub-class
LOC_Os07g45120Os.50355.1.S1_at11/117+26932616..26935660expressed protein
LOC_Os07g45130NANA7+26940386..26940934hypothetical protein
LOC_Os07g45140OsAffx.29532.1.S1_x_at6/117+26945889..26946224hypothetical protein
LOC_Os07g45150OsAffx.28910.1.S1_at11/117+26948105..26948676hypothetical protein
LOC_Os07g45160Os.26481.1.S1_at11/117+26950751..26961029SAC3/GANP family protein, expressed
LOC_Os07g45170OsAffx.28911.2.S1_at11/117+26963537..26965355expressed protein
LOC_Os07g45180OsAffx.28912.1.S1_at11/117+26970359..26974686SWIM zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006168biological_processadenine salvage
GO:0005829cellular_componentcytosol
GO:0003999molecular_functionadenine phosphoribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28910.1.S1_at--497--8153Chr05:8169524..8169545 (22 bp)
GGACAATGGCATCCCTAGAGCCAAA
NONE
OsAffx.28910.1.S1_at--875--10031Chr07:26948602..26948626 (25 bp)
TAGAGCCAAATCTCTGCACTGCGTC
LOC_Os07g45150
OsAffx.28910.1.S1_at--105--2551Chr07:26948576..26948600 (25 bp)
AACTGACGCGCCACAGGTTGTTCAA
LOC_Os07g45150
OsAffx.28910.1.S1_at--480--2431Chr07:26948545..26948569 (25 bp)
AAAACCTACTATGCTGCCACTGATT
LOC_Os07g45150
OsAffx.28910.1.S1_at--274--9631Chr07:26948491..26948515 (25 bp)
TCAGTCCATGGAGAAGATTGTGCTT
LOC_Os07g45150
OsAffx.28910.1.S1_at--1031--6591Chr07:26948476..26948500 (25 bp)
GATTGTGCTTCCGAGACCAAGCTTC
LOC_Os07g45150
OsAffx.28910.1.S1_at--1008--1691Chr07:26948461..26948485 (25 bp)
ACCAAGCTTCAACCTGCAATTACTA
LOC_Os07g45150
OsAffx.28910.1.S1_at--318--5491Chr07:26948403..26948427 (25 bp)
GAACAGAGGGATGCCAATGACGACG
LOC_Os07g45150
OsAffx.28910.1.S1_at--819--5791Chr07:26948361..26948385 (25 bp)
GACGAAGATTATTCTATGGACATTC
LOC_Os07g45150
OsAffx.28910.1.S1_at--70--9371Chr07:26948160..26948184 (25 bp)
TCGAGTTGTATCACCAATGGACTGG
LOC_Os07g45150
OsAffx.28910.1.S1_at--977--811Chr07:26948144..26948168 (25 bp)
ATGGACTGGAAACCATCCCAGCCAA
LOC_Os07g45150
Target Sequence 
GGACAATGGCATCCCTAGAGCCAAATCTCTGCACTGCGTCAAACTGACGCGCCACAGGTTGTTCAACACAACAAAACCTA
CTATGCTGCCACTGATTGGAGATGGAAACGAACCGAAGAACAATAATCAGTCCATGGAGAAGATTGTGCTTCCGAGACCA
AGCTTCAACCTGCAATTACTAGGGCAAGAGGAAGACCGAAGGAGCGAAATGCAGGAACAGAGGGATGCCAATGACGACGA
CAAGGAAGTCACTGATGACGAAGATTATTCTATGGACATTCTATTTCCAAAAAGTAGACACCGTGATGGTTCTATATACA
GGGGCATCATGGATACATGGTGGAAAAAGGAATTGCGTATTGCAGATCGTAATGAGATGATTCTAGATGGTATCGAGTTG
TATCACCAATGGACTGGAAACCATCCCAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis