Browse Element(s) Details


Os.50355.1.S1_at

Description gb:AK120856.1
DB_XREF= gi:37990479
TID=Os.50355.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50355 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024D13, full insert sequence.
FL= gb:AK120856.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4512011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45080Os.30366.1.S1_at11/117+26909822..26910750expressed protein
LOC_Os07g45090Os.7359.1.S1_at11/117+26911801..26915801NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os07g45100Os.45919.1.S1_at10/117+26916678..26922195Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os07g45110OsAffx.13097.1.S1_s_at11/117+26923497..26926570transposon protein, putative, Mutator sub-class
LOC_Os07g45120Os.50355.1.S1_at11/117+26932616..26935660expressed protein
LOC_Os07g45130NANA7+26940386..26940934hypothetical protein
LOC_Os07g45140OsAffx.29532.1.S1_x_at6/117+26945889..26946224hypothetical protein
LOC_Os07g45150OsAffx.28910.1.S1_at11/117+26948105..26948676hypothetical protein
LOC_Os07g45160Os.26481.1.S1_at11/117+26950751..26961029SAC3/GANP family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50355.1.S1_at--322--3511Chr07:26935061..26935085 (25 bp)
CATGACTAGGAAGGACCAGTGCTAT
LOC_Os07g45120
Os.50355.1.S1_at--1067--2351Chr07:26935096..26935120 (25 bp)
AAACCAATCAAAGGTGGATGCCAAA
LOC_Os07g45120
Os.50355.1.S1_at--1106--6091Chr07:26935122..26935146 (25 bp)
GAGTGCTGGGCAAAAAACGATCAAT
LOC_Os07g45120
Os.50355.1.S1_at--189--5391Chr07:26935183..26935207 (25 bp)
GAAGCAACAATCTTAGCACCCATCA
LOC_Os07g45120
Os.50355.1.S1_at--566--3351Chr07:26935199..26935223 (25 bp)
CACCCATCAGTTTGTTCTTCAGGAA
LOC_Os07g45120
Os.50355.1.S1_at--1016--8211Chr07:26935234..26935258 (25 bp)
GGAATTCTAGATGGTTCACATACAT
LOC_Os07g45120
Os.50355.1.S1_at--650--7891Chr07:26935246..26935270 (25 bp)
GGTTCACATACATCTGCAATATTTT
LOC_Os07g45120
Os.50355.1.S1_at--913--9471Chr07:26935258..26935282 (25 bp)
TCTGCAATATTTTGCATCGGCTTGA
LOC_Os07g45120
Os.50355.1.S1_at--934--8871Chr07:26935280..26935304 (25 bp)
TGAGGACAAGCCGAATTCTAAGAAG
LOC_Os07g45120
Os.50355.1.S1_at--564--2492Chr07:26935425..26935449 (25 bp)
AACAGATGAGACATCGGCGGCTTCG
LOC_Os07g45120
Os.50355.1.S1_at--289--2791Chr07:26935637..26935660 (24 bp)
AAGAGGCTGTTAACACAAAACTATG
LOC_Os07g45120
Target Sequence 
CATGACTAGGAAGGACCAGTGCTATGAAAAGAGCCAAACCAATCAAAGGTGGATGCCAAAAGAGTGCTGGGCAAAAAACG
ATCAATCAAAAGCATGCAATTTTGCTCCAAAGGAGTTATATCGAAGCAACAATCTTAGCACCCATCAGTTTGTTCTTCAG
GAAGATGACTATTGGAATTCTAGATGGTTCACATACATCTGCAATATTTTGCATCGGCTTGAGGACAAGCCGAATTCTAA
GAAGAGGGGATTGTTAGGAACTCAATTGGGTTGTACATGGGCTATGTTAGCCATACTACAAGCCCAGCCCATGGAGACTG
AAGAAAGGATACAAAAGGCAGCAGCAGCCCTGCTCGAGGCATCGAACAGATGAGACATCGGCGGCTTCGGCCACGGCGGC
GGCGGCGGCTTGGTTCGGTTGAACCCCGTCGATCTCTATCCCTCTCTTACTCTCTCTCGTGTTCCTCTTCACTACCACTT
CTAGAAGCTTCCTCTACTTCTTCCATCTCAATTCCTCTTCTATTTTTCTGAGATTGTATTTGAATTTGATTGTTCTTGAG
ATTACTGAGTTGGAAGAAGAGGCTGTTAACACAAAACTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis