Browse Element(s) Details


Os.30366.1.S1_at

Description gb:AK108931.1
DB_XREF= gi:32994140
TID=Os.30366.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome3, OSJNBa0013M12.6 (P0503D09.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-A06, full insert sequence.
FL= gb:AK108931.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4508011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45070Os.6145.1.S1_at11/117+26884612..26906849FAT domain-containing protein, putative, expressed
LOC_Os07g45070Os.7533.1.S1_at10/117+26884612..26906849FAT domain-containing protein, putative, expressed
LOC_Os07g45080Os.30366.1.S1_at11/117+26909822..26910750expressed protein
LOC_Os07g45090Os.7359.1.S1_at11/117+26911801..26915801NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os07g45100Os.45919.1.S1_at10/117+26916678..26922195Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os07g45110OsAffx.13097.1.S1_s_at11/117+26923497..26926570transposon protein, putative, Mutator sub-class
LOC_Os07g45120Os.50355.1.S1_at11/117+26932616..26935660expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30366.1.S1_at--897--2051Chr07:26910228..26910252 (25 bp)
ACTTCTCCAAGTACAGGCTGCGGTT
LOC_Os07g45080
Os.30366.1.S1_at--85--9971Chr07:26910338..26910362 (25 bp)
TACCCGTCGCTCAAGGACCAGCAGA
LOC_Os07g45080
Os.30366.1.S1_at--997--2731Chr07:26910362..26910386 (25 bp)
AAGAAGGTGGTCATGGCGCTCCCCG
LOC_Os07g45080
Os.30366.1.S1_at--897--3851Chr07:26910491..26910515 (25 bp)
CTGTAGGCGGCGAGCCCGATTAGTC
LOC_Os07g45080
Os.30366.1.S1_at--1083--4231Chr07:26910506..26910530 (25 bp)
CCGATTAGTCGATTTGCATTGCCAT
LOC_Os07g45080
Os.30366.1.S1_at--1057--4931Chr07:26910521..26910545 (25 bp)
GCATTGCCATGCAGGCATGTGCTTC
LOC_Os07g45080
Os.30366.1.S1_at--35--6731Chr07:26910593..26910617 (25 bp)
GTTCTGTCTGATGCTTTTGTTCGCA
LOC_Os07g45080
Os.30366.1.S1_at--1032--10791Chr07:26910609..26910633 (25 bp)
TTGTTCGCATTTGTTCATCTGTCTG
LOC_Os07g45080
Os.30366.1.S1_at--73--6751Chr07:26910621..26910645 (25 bp)
GTTCATCTGTCTGTTTGTGACCTAA
LOC_Os07g45080
Os.30366.1.S1_at--680--8451Chr07:26910649..26910673 (25 bp)
GGCCAAGAGCTAGTTTGATCTCGTT
LOC_Os07g45080
Os.30366.1.S1_at--578--8831Chr07:26910673..26910697 (25 bp)
TGATTTGCCTCATCTTTGTGCAGTT
LOC_Os07g45080
Target Sequence 
ACTTCTCCAAGTACAGGCTGCGGTTCGGCGACTTCGTCCACGCCTTCTTCTCCGTGGCGGTGTTCGCCGCGGTGGCGCTG
CTCGCCGACGCCAACACGGTGTCGTGCTTCTACCCGTCGCTCAAGGACCAGCAGAAGAAGGTGGTCATGGCGCTCCCCGT
CGTCGTCGGCGCGCTCGCCAGCGTCGTCTTCGTCGTGTTCCCGTCCACCCGCCACGGGATCGGCTACCCGCCGGCGAAGC
CCGCCACGGCGTCGCTGGCGTCGCTGTAGGCGGCGAGCCCGATTAGTCGATTTGCATTGCCATGCAGGCATGTGCTTCCT
TTTTATGGGTTGTGTTTTTTTAAATATTTGCACGTGTGCATATGTGTTCTGTCTGATGCTTTTGTTCGCATTTGTTCATC
TGTCTGTTTGTGACCTAATAAGGCCAAGAGCTAGTTTGATCTCGTTGATTTGCCTCATCTTTGTGCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis