Browse Element(s) Details


Os.7533.1.S1_at

Description gb:AK069294.1
DB_XREF= gi:32979318
TID=Os.7533.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023013H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013H21, full insert sequence.
FL= gb:AK069294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4507010/11FAT domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45020NANA7+26860897..26866989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45030NANA7+26867305..26870246retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45039NANA7+26871223..26872287expressed protein
LOC_Os07g45050OsAffx.16717.1.S1_at11/117+26878546..26880196hypothetical protein
LOC_Os07g45060Os.9211.1.S1_at11/117+26880471..26882382SCP-like extracellular protein, expressed
LOC_Os07g45070Os.6145.1.S1_at11/117+26884612..26906849FAT domain-containing protein, putative, expressed
LOC_Os07g45070Os.7533.1.S1_at10/117+26884612..26906849FAT domain-containing protein, putative, expressed
LOC_Os07g45080Os.30366.1.S1_at11/117+26909822..26910750expressed protein
LOC_Os07g45090Os.7359.1.S1_at11/117+26911801..26915801NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os07g45100Os.45919.1.S1_at10/117+26916678..26922195Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os07g45110OsAffx.13097.1.S1_s_at11/117+26923497..26926570transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007004biological_processtelomerase-dependent telomere maintenance
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0043247biological_processtelomere maintenance in response to DNA damage
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0016303molecular_functionphosphatidylinositol 3-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7533.1.S1_at--1070--2891Chr07:26903109..26903133 (25 bp)
AAGGTATTGATCAGCCAAGCATGGA
LOC_Os07g45070
Os.7533.1.S1_at--604--4591Chr07:26902465..26902970 (25 bp)
GCGCACAATTCCTCAGTTGCTTGAA
LOC_Os07g45070
Os.7533.1.S1_at--518--5331Chr07:26901955..26902419 (25 bp)
GAAGTCCCATTACAGACTGTGCTGA
LOC_Os07g45070
Os.7533.1.S1_at--207--9011Chr07:26901933..26901957 (25 bp)
TGAATTTGCAACCACCCTTGGAGTA
LOC_Os07g45070
Os.7533.1.S1_at--125--8831NONE
TGATAAGGACACTCGTACTAGGAAT
NONE
Os.7533.1.S1_at--650--4951Chr07:26901750..26901774 (25 bp)
GCATAACCCATGCTCATTGGCCACG
LOC_Os07g45070
Os.7533.1.S1_at--785--5611Chr07:26901477..26901501 (25 bp)
GACTTCGGGTGTTCTAAAATCTGGG
LOC_Os07g45070
Os.7533.1.S1_at--451--9671Chr07:26901450..26901474 (25 bp)
TCACTGTTTGGCTCTTTTTAAGGAA
LOC_Os07g45070
Os.7533.1.S1_at--576--9011Chr07:26901403..26901427 (25 bp)
TGCAATGTTTTTCCCAAATGCTAGC
LOC_Os07g45070
Os.7533.1.S1_at--889--731Chr07:26901350..26901374 (25 bp)
ATGTTTTCCTTTTGCATGCCAGACC
LOC_Os07g45070
Os.7533.1.S1_at--1025--4411Chr07:26901333..26901357 (25 bp)
GCCAGACCTCTTTGATTGCATGATA
LOC_Os07g45070
Target Sequence 
AAGGTATTGATCAGCCAAGCATGGATGAAGCACGGATTTTGTTGGGGCGTATACTGGATGCATTTGTTGGGAAGTTCAGG
ACATTGAAGCGCACAATTCCTCAGTTGCTTGAAGAAGGCGAGGAAGGGAAGGAACACCAAAATTTGAGAATGAAACTTGA
AGTCCCATTACAGACTGTGCTGAATTTGCAACCACCCTTGGAGTACACAAAGGAGATTAATGATTACAAAAGTCTGATAA
GGACACTCGTACTAGGAATGAAGACAATAATCTGGAGCATAACCCATGCTCATTGGCCACGCCCACAGCAACAAAGTCAA
CAATCATCAAATTTATCAGTACAACCATTCAGGGGACTGCGGGAGGATGAGGTGCGGAAGACTTCGGGTGTTCTAAAATC
TGGGGTTCACTGTTTGGCTCTTTTTAAGGAAAAGGATGAGGAGAGAGACATTCTGCAATGTTTTTCCCAAATGCTAGCTA
TAATGGAAGCTCGGGATATAATGGACATGTTTTCCTTTTGCATGCCAGACCTCTTTGATTGCATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis