Browse Element(s) Details


Os.45919.1.S1_at

Description gb:NM_185891.1
DB_XREF= gi:34898867
GEN=P0503D09.3
TID=Os.45919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45919 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU222830(S0967)~similar to Arabidopsis thaliana chromosome3,At3g21530~unknown protein (P0503D09.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST AU222830(S0967)~similar to Arabidopsis thaliana chromosome3,At3g21530~unknown protein (P0503D09.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4510010/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45070Os.6145.1.S1_at11/117+26884612..26906849FAT domain-containing protein, putative, expressed
LOC_Os07g45070Os.7533.1.S1_at10/117+26884612..26906849FAT domain-containing protein, putative, expressed
LOC_Os07g45080Os.30366.1.S1_at11/117+26909822..26910750expressed protein
LOC_Os07g45090Os.7359.1.S1_at11/117+26911801..26915801NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os07g45100Os.45919.1.S1_at10/117+26916678..26922195Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os07g45110OsAffx.13097.1.S1_s_at11/117+26923497..26926570transposon protein, putative, Mutator sub-class
LOC_Os07g45120Os.50355.1.S1_at11/117+26932616..26935660expressed protein
LOC_Os07g45130NANA7+26940386..26940934hypothetical protein
LOC_Os07g45140OsAffx.29532.1.S1_x_at6/117+26945889..26946224hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45919.1.S1_at--353--1151NONE
AGTCCGACTTCAACGTGCTGAGGGC
NONE
Os.45919.1.S1_at--262--6131Chr07:26917623..26917647 (25 bp)
GAGGGCCACCATTGAGGTTCCGAGA
LOC_Os07g45100
Os.45919.1.S1_at--809--5851Chr07:26917565..26917589 (25 bp)
GACCACCTTGATGAGAGCTGGAGGA
LOC_Os07g45100
Os.45919.1.S1_at--215--1311Chr07:26917534..26917558 (25 bp)
AGATGAACGCCATACTGCGCTCCAG
LOC_Os07g45100
Os.45919.1.S1_at--790--9671Chr07:26917492..26917516 (25 bp)
TCACCGGAGGGCTCAATGCGCTCGA
LOC_Os07g45100
Os.45919.1.S1_at--175--791Chr07:26917334..26917467 (25 bp)
ATGGGCCGACATCGTCAAGTACTAT
LOC_Os07g45100
Os.45919.1.S1_at--540--7511Chr07:26916872..26916896 (25 bp)
GTGGATTACATACTGGCCTCACCAA
LOC_Os07g45100
Os.45919.1.S1_at--438--3731Chr07:26916840..26916864 (25 bp)
CTACAAGTTCGTGCCAGGATCTTAC
LOC_Os07g45100
Os.45919.1.S1_at--295--6431Chr07:26916823..26916847 (25 bp)
GATCTTACACGGTCATATCCTCAAA
LOC_Os07g45100
Os.45919.1.S1_at--557--8171Chr07:26916797..26916821 (25 bp)
GGAACATCTGATCATCACATCGTTA
LOC_Os07g45100
Os.45919.1.S1_at--17--2691Chr07:26916729..26916753 (25 bp)
AAGCGGCAACCAGAGACAGAGAGTA
LOC_Os07g45100
Target Sequence 
AGTCCGACTTCAACGTGCTGAGGGCCACCATTGAGGTTCCGAGAGCCGGGGAGGTCAACTTCCACTGCACACATCTCGAC
CACCTTGATGAGAGCTGGAGGATGAAGCAGATGAACGCCATACTGCGCTCCAGCGATGGCCCTCACATCCTCACCGGAGG
GCTCAATGCGCTCGACGGCACCGACTACTCCGACGAGCGATGGGCCGACATCGTCAAGTACTATGAGGAGATCGGGAAGC
CGACGCCGAAGGCGGAGGTGATGAAGTACCTGAAGGGGAAGCAGTATGTTGATGCCAAGGATTTTGCAGGAGAATGTGAG
GCTGTGGTGGTTGTTGCTAAAGGGCAAGTACAAGGGACATGCAAGTATGGCACAAGGGTGGATTACATACTGGCCTCACC
AAACTCTCCCTACAAGTTCGTGCCAGGATCTTACACGGTCATATCCTCAAAAGGAACATCTGATCATCACATCGTTAAAG
TTGATGTAACAATACAGGACAAGAAAGAAACTGATGAAGAAAGCGGCAACCAGAGACAGAGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis