Browse Element(s) Details


OsAffx.29532.1.S1_x_at

Description gb:NM_185896.1
DB_XREF= gi:34898877
GEN=P0503D09.9
TID=OsAffx.29532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome1,P0034C09.6 (P0503D09.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g451406/11hypothetical protein
LOC_Os02g323904/11hypothetical protein
LOC_Os11g072003/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45100Os.45919.1.S1_at10/117+26916678..26922195Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os07g45110OsAffx.13097.1.S1_s_at11/117+26923497..26926570transposon protein, putative, Mutator sub-class
LOC_Os07g45120Os.50355.1.S1_at11/117+26932616..26935660expressed protein
LOC_Os07g45130NANA7+26940386..26940934hypothetical protein
LOC_Os07g45140OsAffx.29532.1.S1_x_at6/117+26945889..26946224hypothetical protein
LOC_Os07g45150OsAffx.28910.1.S1_at11/117+26948105..26948676hypothetical protein
LOC_Os07g45160Os.26481.1.S1_at11/117+26950751..26961029SAC3/GANP family protein, expressed
LOC_Os07g45170OsAffx.28911.2.S1_at11/117+26963537..26965355expressed protein
LOC_Os07g45180OsAffx.28912.1.S1_at11/117+26970359..26974686SWIM zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29532.1.S1_x_at--75--10152Chr11:3610097..3610121 (25 bp)
TATCGAGCCGCTACGCAAGCTGGAG
LOC_Os11g07200
OsAffx.29532.1.S1_x_at--1048--1653Chr11:3610102..3610126 (25 bp)
AGCCGCTACGCAAGCTGGAGTGGAA
LOC_Os11g07200
OsAffx.29532.1.S1_x_at--663--9956Chr11:3610156..3610180 (25 bp)
TACCGCGTCGGGAGATCGCTGGGAA
LOC_Os11g07200
OsAffx.29532.1.S1_x_at--712--532Chr07:26946028..26946052 (25 bp)
ATCGCTGGGAAGAGCGTCCGACGGC
LOC_Os07g45140
OsAffx.29532.1.S1_x_at--438--6011Chr07:26946093..26946117 (25 bp)
GAGAGAAGGCGATCGGAGTCCCCTT
LOC_Os07g45140
OsAffx.29532.1.S1_x_at--903--2931Chr07:26946098..26946122 (25 bp)
AAGGCGATCGGAGTCCCCTTCGGCT
LOC_Os07g45140
OsAffx.29532.1.S1_x_at--170--7553Chr11:3610445..3610469 (25 bp)
GGGCGGCGAACTTGGCAGTCACGGG
NONE
OsAffx.29532.1.S1_x_at--852--2514Chr11:3610453..3610915 (25 bp)
AACTTGGCAGTCACGGGCGGCAGAG
NONE
OsAffx.29532.1.S1_x_at--103--9495Chr11:3610534..3610558 (25 bp)
TCTGCCCATGCCATTCTGGGAGAAA
NONE
OsAffx.29532.1.S1_x_at--700--13511Chr08:22156946..22156970 (25 bp)
AGAGAGAGCTCTGCCTCCGGGAGTT
NONE
OsAffx.29532.1.S1_x_at--945--10851Chr07:26946466..26946490 (25 bp)
TTGGAGCGGCCAGGCACGCGTCGTA
NONE
Target Sequence 
TATCGAGCCGCTACGCAAGCTGGAGTGGAAGAGGAAAAGCGGGGAGGGAGAACGGGGGCTACCGCGTCGGGAGATCGCTG
GGAAGAGCGTCCGACGGCGCGGCGGGACCGCCTCAGCCTCGGGCCGGGGAAGGGGACGGAGAGAAGGCGATCGGAGTCCC
CTTCGGCTCCGCGCGCACGCCGACTTCCCGGCACGTGGGGGCGGCGAACTTGGCAGTCACGGGCGGCAGAGGGGGGGGGT
CGATGGTGCCGGTCGGGGAAAAAGCAAAAGGGGAGGGAGGAAAGGGGGCTCTGCCCATGCCATTCTGGGAGAAAGGAGGA
GGGAGAGAGAGCTCTGCCTCCGGGAGTTGGACGCACGCGGCTTGGAGCGGCCAGGCACGCGTCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29532.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis