Browse Element(s) Details


Os.7359.1.S1_at

Description gb:AK065185.1
DB_XREF= gi:32975203
TID=Os.7359.1
CNT=35
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NADH dehydrogenase (P0503D09.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002D23, full insert sequence.
FL= gb:AK065185.1 gb:AK100730.1 gb:AK119179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4509011/11NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45070Os.6145.1.S1_at11/117+26884612..26906849FAT domain-containing protein, putative, expressed
LOC_Os07g45070Os.7533.1.S1_at10/117+26884612..26906849FAT domain-containing protein, putative, expressed
LOC_Os07g45080Os.30366.1.S1_at11/117+26909822..26910750expressed protein
LOC_Os07g45090Os.7359.1.S1_at11/117+26911801..26915801NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os07g45100Os.45919.1.S1_at10/117+26916678..26922195Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os07g45110OsAffx.13097.1.S1_s_at11/117+26923497..26926570transposon protein, putative, Mutator sub-class
LOC_Os07g45120Os.50355.1.S1_at11/117+26932616..26935660expressed protein
LOC_Os07g45130NANA7+26940386..26940934hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0005739cellular_componentmitochondrion
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7359.1.S1_at--571--8531Chr07:26914677..26914701 (25 bp)
TGGACTATGATGCACTCAAGGCTGT
LOC_Os07g45090
Os.7359.1.S1_at--369--71Chr07:26914766..26914790 (25 bp)
ATTGCTAGGCTATCGTACTTCTACA
LOC_Os07g45090
Os.7359.1.S1_at--441--1251Chr07:26914799..26914823 (25 bp)
AGTTGTGGGCAGTGCACACCTTGCA
LOC_Os07g45090
Os.7359.1.S1_at--838--3451Chr07:26914973..26914997 (25 bp)
CAGGGACTTATCAGGCACTTCAGGC
LOC_Os07g45090
Os.7359.1.S1_at--294--971Chr07:26915009..26915033 (25 bp)
AGGAGAATCCGTGAGCGAGCCGAAA
LOC_Os07g45090
Os.7359.1.S1_at--247--1551Chr07:26915047..26915071 (25 bp)
AGCTTCGGCTTAGGACACTGTCAAT
LOC_Os07g45090
Os.7359.1.S1_at--1146--7071Chr07:26915066..26915090 (25 bp)
GTCAATGACGATCCTGCACTAGTTT
LOC_Os07g45090
Os.7359.1.S1_at--499--5111Chr07:26915081..26915105 (25 bp)
GCACTAGTTTCCTGATTTCTTTCAC
LOC_Os07g45090
Os.7359.1.S1_at--201--6251Chr07:26915122..26915146 (25 bp)
GATGGAGCTCATCTCTGTATACGAA
LOC_Os07g45090
Os.7359.1.S1_at--388--8771Chr07:26915137..26915161 (25 bp)
TGTATACGAAATGCAGCTCCCCTGA
LOC_Os07g45090
Os.7359.1.S1_at--619--3391Chr07:26915150..26915174 (25 bp)
CAGCTCCCCTGATTTGTTTAAACCT
LOC_Os07g45090
Target Sequence 
TGGACTATGATGCACTCAAGGCTGTGCAATCTGGATTGGGTACTGCAGCAGTTATTGTGATGGACAAGTCCACAGATGTT
GTTGATGCAATTGCTAGGCTATCGTACTTCTACAAGCATGAGAGTTGTGGGCAGTGCACACCTTGCAGGGAGGGAACAGG
GTGGCTGTGGATGATCATGGAGAGGCTCAAAGTAGGTAACGCNAAGCTTGAGGAGATTGATATGCTTCAGGAGGTCACTA
AGCAGATTGAAGGGCATACTATTTGTGCCCTTGGGGATGCTGCTGCATGGCCTGTGCAGGGACTTATCAGGCACTTCAGG
CCAGAACTGGAAAGGAGAATCCGTGAGCGAGCCGAAAGGGAGCTACTGGCAGCTTCGGCTTAGGACACTGTCAATGACGA
TCCTGCACTAGTTTCCTGATTTCTTTCACAGAAATAATGCAAACTGATGGAGCTCATCTCTGTATACGAAATGCAGCTCC
CCTGATTTGTTTAAACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis