Browse Element(s) Details


Os.9211.1.S1_at

Description gb:BI802078
DB_XREF= gi:16574782
DB_XREF=H069C12
CLONE=H069C12
TID=Os.9211.1
CNT=20
FEA=mRNA
TIER=ConsEnd
STK=3
UG=Os.9211 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU163784(E11036),C73561(E11036)~similar to Arabidopsis thaliana AY088405.1~unknown protein (OJ1458_B07.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4506011/11SCP-like extracellular protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45020NANA7+26860897..26866989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45030NANA7+26867305..26870246retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45039NANA7+26871223..26872287expressed protein
LOC_Os07g45050OsAffx.16717.1.S1_at11/117+26878546..26880196hypothetical protein
LOC_Os07g45060Os.9211.1.S1_at11/117+26880471..26882382SCP-like extracellular protein, expressed
LOC_Os07g45070Os.6145.1.S1_at11/117+26884612..26906849FAT domain-containing protein, putative, expressed
LOC_Os07g45070Os.7533.1.S1_at10/117+26884612..26906849FAT domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9211.1.S1_at--505--1771Chr07:26881056..26881080 (25 bp)
ACCGGAGCAAACACTGTCCCTGGCA
LOC_Os07g45060
Os.9211.1.S1_at--809--2011Chr07:26881013..26881037 (25 bp)
ACTACCCAAAGTACCTCGACCATTG
LOC_Os07g45060
Os.9211.1.S1_at--894--71Chr07:26880992..26881016 (25 bp)
ATTGCCATCTCAACGCGTCGGTGAC
LOC_Os07g45060
Os.9211.1.S1_at--663--10651Chr07:26880938..26880962 (25 bp)
TTCCCGGACTTGTACCTGATGTGGT
LOC_Os07g45060
Os.9211.1.S1_at--1092--7491Chr07:26880918..26880942 (25 bp)
GTGGTTCTGACCAACTACACCAAGT
LOC_Os07g45060
Os.9211.1.S1_at--741--6891Chr07:26880880..26880904 (25 bp)
GTATCTGAATGACACCAAGTTCTCT
LOC_Os07g45060
Os.9211.1.S1_at--29--7691Chr07:26880799..26880823 (25 bp)
GGGTTCAGGTGATTACTCCCCTGCT
LOC_Os07g45060
Os.9211.1.S1_at--455--6571Chr07:26880727..26880751 (25 bp)
GATTCTTTTGTTGGTAGGCATTGTA
LOC_Os07g45060
Os.9211.1.S1_at--697--6012Chr07:26880665..26880689 (25 bp)
GAGAGTGTACCTTACTTTTGATGTA
LOC_Os07g45060
Os.9211.1.S1_at--1086--7051Chr07:26880643..26880667 (25 bp)
GTAATCCTTTTTTGGATCGTCCATA
LOC_Os07g45060
Os.9211.1.S1_at--1059--6391Chr07:26880563..26880587 (25 bp)
GATCGGAACGTATTCTTTTGACTGT
LOC_Os07g45060
Target Sequence 
ACCGGAGCAAACACTGTCCCTGGCACCGAGCAGCAGTTCCCCGACTACCCAAAGTACCTCGACCATTGCCATCTCAACGC
GTCGGTGACCGGAGACGGTCAGGTGATGCCGGCCTGCGTTCCCGGACTTGTACCTGATGTGGTTCTGACCAACTACACCA
AGTCACAGTACAACCAGTATCTGAATGACACCAAGTTCTCTGGTGTTGGGATCGCGAATGAGGGAGATTGGGTGGTCGTN
GTCCTCAGCACGAGCTCGGGTTCAGGTGATTACTCCCCTGCTCCCCCTGGCTCCAACTGGGCTCCTTCAGTTCATCCCTT
CAANCAACTGATTCTTTTGTTGGTAGGCATTGTATGTTTGCTGATGATTTGAGAGATTTGATCATACTGCAGAGAGTGTA
CCTTACTTTTGATGTAATCCTTTTTTGGATCGTCCATATTTGAATTGAACTTTGTCTCATTGACAACTTGCTAGTNTTTG
CTATGAGGATATGGATCGGAACGTATTCTTTTGACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis