Browse Element(s) Details


OsAffx.16717.1.S1_at

Description tigr:9635.m04525
TID=OsAffx.16717.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4505011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45020NANA7+26860897..26866989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45030NANA7+26867305..26870246retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45039NANA7+26871223..26872287expressed protein
LOC_Os07g45050OsAffx.16717.1.S1_at11/117+26878546..26880196hypothetical protein
LOC_Os07g45060Os.9211.1.S1_at11/117+26880471..26882382SCP-like extracellular protein, expressed
LOC_Os07g45070Os.6145.1.S1_at11/117+26884612..26906849FAT domain-containing protein, putative, expressed
LOC_Os07g45070Os.7533.1.S1_at10/117+26884612..26906849FAT domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16717.1.S1_at--242--3211Chr07:26878826..26878850 (25 bp)
CAAGGCTCTCTGTACAACGTGTTAT
LOC_Os07g45050
OsAffx.16717.1.S1_at--621--2571Chr07:26878841..26878865 (25 bp)
AACGTGTTATCTTCACCGAGACATT
LOC_Os07g45050
OsAffx.16717.1.S1_at--754--8771Chr07:26878876..26878900 (25 bp)
TGTTTGACTGTTGCACTCAGCTGGA
LOC_Os07g45050
OsAffx.16717.1.S1_at--749--2011Chr07:26878890..26879112 (25 bp)
ACTCAGCTGGACATTCCTCAGGGAA
LOC_Os07g45050
OsAffx.16717.1.S1_at--1154--2031Chr07:26879112..26879136 (25 bp)
ACTATTTCTTGCATGTGGTGCCCAA
LOC_Os07g45050
OsAffx.16717.1.S1_at--541--4171Chr07:26879132..26879156 (25 bp)
CCCAATTGGGCTTCGAAGGCTTCAT
LOC_Os07g45050
OsAffx.16717.1.S1_at--508--9791Chr07:26879159..26879183 (25 bp)
TAAGCGAAGTTTTACAAGGCACCAA
LOC_Os07g45050
OsAffx.16717.1.S1_at--290--4331Chr07:26879821..26879845 (25 bp)
CCATCCGTTGAGCTACTTTTCATTG
LOC_Os07g45050
OsAffx.16717.1.S1_at--611--8971Chr07:26880081..26880105 (25 bp)
TGAAAAAACTCCAGTTTGCCGGCTT
LOC_Os07g45050
OsAffx.16717.1.S1_at--942--4391Chr07:26880109..26880133 (25 bp)
GCCACTCAAGCAACAGCTGGTATTT
LOC_Os07g45050
OsAffx.16717.1.S1_at--326--1691Chr07:26880139..26880163 (25 bp)
AGCCATCATGGATCTTAGGGACAAT
LOC_Os07g45050
Target Sequence 
CAAGGCTCTCTGTACAACGTGTTATCTTCACCGAGACATTCATCATATTCTGTTTGACTGTTGCACTCAGCTGGACATTC
CTCAGGGAACTATTTCTTGCATGTGGTGCCCAATTGGGCTTCGAAGGCTTCATGTTAAGCGAAGTTTTACAAGGCACCAA
AGATTTGCATACTTTGACAATAGATTTCCAAGGAGAAAAGCTTTGGGTACAACCTGAACAAAAACAATTCTGCCCTGCAT
TCAACAATCTAAAGACTTTATCTATTCTTTGTGTTTATGTTGAATTTGACCTGTTATGGGCTTTAAACCTCCTTGAAGCT
GCGCCATCCGTTGAGCTACTTTTCATTGATACCTGGGAACATATATGCTTGGTGGACCAAATGGATGAAGAGGGAAGAAA
GGATATCTATGGAGAAAGAACACATCCTTCATGGGAGATATCCGAGTTTACTGGCACCAGAAAATGGCGATTGAAAAAAC
TCCAGTTTGCCGGCTTTAGGCCACTCAAGCAACAGCTGGTATTTTTAAAAGCCATCATGGATCTTAGGGACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis