Browse Element(s) Details


OsAffx.28998.1.S1_at

Description tigr:9636.m00178
TID=OsAffx.28998.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0274011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02700Os.10579.1.S1_at11/118+1121539..1123208Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os08g02710OsAffx.16795.1.S1_at11/118+1125211..1129368hypothetical protein
LOC_Os08g02720OsAffx.28997.1.S1_at11/118+1131781..1133349hypothetical protein
LOC_Os08g02730Os.57407.1.S1_at11/118+1142598..1144210expressed protein
LOC_Os08g02730Os.1678.1.S1_at1/118+1142598..1144210expressed protein
LOC_Os08g02740OsAffx.28998.1.S1_at11/118+1145194..1146309hypothetical protein
LOC_Os08g02750OsAffx.28999.1.S1_at11/118+1148535..1149905expressed protein
LOC_Os08g02760NANA8+1155898..1157776retrotransposon, putative, centromere-specific
LOC_Os08g02770NANA8+1158632..1160776retrotransposon protein, putative, unclassified
LOC_Os08g02780NANA8+1161403..1164694retrotransposon protein, putative, unclassified
LOC_Os08g02790NANA8+1166395..1170053retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28998.1.S1_at--137--6431Chr08:1146133..1146157 (25 bp)
GATCATTCGCGTGCCAGTGAAGAAC
LOC_Os08g02740
OsAffx.28998.1.S1_at--86--2592Chr12:27295774..27295793 (20 bp)
AACGTGTCGAGTAGCGCTGGTCACT
NONE
OsAffx.28998.1.S1_at--725--8592Chr07:28704286..28704364 (25 bp)
TGGTCACTCATCCAACGCCAAATAA
NONE
OsAffx.28998.1.S1_at--434--4031Chr08:1146029..1146053 (25 bp)
CGCCAAATAAGACGATTCCCGACAC
LOC_Os08g02740
OsAffx.28998.1.S1_at--1098--4331Chr08:1145913..1145937 (25 bp)
CCAGGAATTGTTTGCCAAGCCAGAA
LOC_Os08g02740
OsAffx.28998.1.S1_at--157--9451Chr08:1145871..1145895 (25 bp)
TCGGAGGCGCTGATCAGGCACAACG
LOC_Os08g02740
OsAffx.28998.1.S1_at--896--3731Chr08:1145775..1145799 (25 bp)
CTCACTATCGCCCTATACGAAGTAG
LOC_Os08g02740
OsAffx.28998.1.S1_at--901--1052Chr10:20572749..20572773 (25 bp)
AGGTGGATGCCTCGAACATGTTAGA
NONE
OsAffx.28998.1.S1_at--1036--5971Chr08:1145529..1145753 (25 bp)
GAGACGGTGCGACGCTTCTTGTCAA
LOC_Os08g02740
OsAffx.28998.1.S1_at--524--8931Chr08:1145495..1145519 (25 bp)
TGACCTAGACTGGAAGACCGATCGT
LOC_Os08g02740
OsAffx.28998.1.S1_at--874--6151Chr08:1145236..1145260 (25 bp)
GAGGTCAAGCGTGCCTGAGCTCAAA
LOC_Os08g02740
Target Sequence 
GATCATTCGCGTGCCAGTGAAGAACAACACAGGCAAAAGTGTGCTGGCCATAGAAAAACGCCTGGTATGCCGAACGTGTC
GAGTAGCGCTGGTCACTCATCCAACGCCAAATAAGACGATTCCCGACACCCGGCGAGAGCTGAATGTGAAGCACCACATC
CCAAACAAGAAGAAACTGGGAGATGACCAGGATAGTGAGGGCACCGCGGATATCAGAAACCCAGGAATTGTTTGCCAAGC
CAGAAGCAACCGGGCACGAACCTCGGAGGCGCTGATCAGGCACAACGAAGAGGAGATCTGGAGCCAAGGAGGCCACCGAG
CAGACGCCGATCCATTGGTCAGACCAGAAGAGCATCGACTCACTATCGCCCTATACGAAGTAGGTGGATGCCTCGAACAT
GTTAGAGACGGTGCGACGCTTCTTGTCAATGGCCTTAATGACCTAGACTGGAAGACCGATCGTCATAGACACATGGACTG
GAATAGAGGAGAGAACATACTAAACCAACATAGAGTGGCCAGCCAGAGTGGCCTGAGGTCAAGCGTGCCTGAGCTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28998.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis