Browse Element(s) Details


OsAffx.28999.1.S1_at

Description tigr:9636.m00179
TID=OsAffx.28999.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0275011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02710OsAffx.16795.1.S1_at11/118+1125211..1129368hypothetical protein
LOC_Os08g02720OsAffx.28997.1.S1_at11/118+1131781..1133349hypothetical protein
LOC_Os08g02730Os.57407.1.S1_at11/118+1142598..1144210expressed protein
LOC_Os08g02730Os.1678.1.S1_at1/118+1142598..1144210expressed protein
LOC_Os08g02740OsAffx.28998.1.S1_at11/118+1145194..1146309hypothetical protein
LOC_Os08g02750OsAffx.28999.1.S1_at11/118+1148535..1149905expressed protein
LOC_Os08g02760NANA8+1155898..1157776retrotransposon, putative, centromere-specific
LOC_Os08g02770NANA8+1158632..1160776retrotransposon protein, putative, unclassified
LOC_Os08g02780NANA8+1161403..1164694retrotransposon protein, putative, unclassified
LOC_Os08g02790NANA8+1166395..1170053retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g02800NANA8+1172975..1173340hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28999.1.S1_at--997--10411Chr08:1149244..1149268 (25 bp)
TTATGAAAGCTACCGGCCAGCTCAT
LOC_Os08g02750
OsAffx.28999.1.S1_at--80--8491Chr08:1149299..1149323 (25 bp)
TGGCGGATGCCCGAACGAGAGATCA
LOC_Os08g02750
OsAffx.28999.1.S1_at--357--1351Chr08:1149316..1149340 (25 bp)
AGAGATCAACTACGTGGCGGCCAAC
LOC_Os08g02750
OsAffx.28999.1.S1_at--698--7531Chr08:1149329..1149353 (25 bp)
GTGGCGGCCAACACATCGTTGCTGT
LOC_Os08g02750
OsAffx.28999.1.S1_at--1109--9931Chr08:1149570..1149594 (25 bp)
TACGTCTACGGCGACTTTGTGGTGA
LOC_Os08g02750
OsAffx.28999.1.S1_at--23--10251Chr08:1149585..1149609 (25 bp)
TTTGTGGTGAGCTCGTACCTGTCGG
LOC_Os08g02750
OsAffx.28999.1.S1_at--1045--1831Chr08:1149696..1149720 (25 bp)
ACGCTGGACTTGTTCAAGCGCATCG
LOC_Os08g02750
OsAffx.28999.1.S1_at--580--491Chr08:1149717..1149741 (25 bp)
ATCGGCCAGCATCTCAGCTTGGGCA
LOC_Os08g02750
OsAffx.28999.1.S1_at--666--4131Chr08:1149744..1149768 (25 bp)
CGCTACTTCGTCGTCTTGGAGCAGA
LOC_Os08g02750
OsAffx.28999.1.S1_at--964--3431Chr08:1149765..1149789 (25 bp)
CAGATCGAGGCGTACCGGCGGAACC
LOC_Os08g02750
OsAffx.28999.1.S1_at--349--2091Chr08:1149829..1149853 (25 bp)
ACATCAAGGCCATCAGCGTCATCTT
LOC_Os08g02750
Target Sequence 
TTATGAAAGCTACCGGCCAGCTCATCTCCTCGTTCTCCTCCGGTTCAGCCAGATATGGCGGATGCCCGAACGAGAGATCA
ACTACGTGGCGGCCAACACATCGTTGCTGTCCAGCAGCGCCGTCGAGCTGGCCCAGATCGGCGTCAACCTGACGGCCAGC
ACGGCGGCGACGAGCAGCGGAGCAGCGGCGTCGTACGTCTACGGCGACTTTGTGGTGAGCTCGTACCTGTCGGCGCTGGC
GATGCTGATGGACAGGGAGGAGGACGTGCAGCAGCTGCGGGGGCATCGCGTGGTGCTCAGCACCTTCAGCAACACGCAGA
CGCTGGACTTGTTCAAGCGCATCGGCCAGCATCTCAGCTTGGGCAGCCGCTACTTCGTCGTCTTGGAGCAGATCGAGGCG
TACCGGCGGAACCGGCCGGCAAGGACCATGGTCTACAAGTTCCTCTACAAGCACATCAAGGCCATCAGCGTCATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis