Browse Element(s) Details


OsAffx.29030.1.S1_at

Description tigr:9636.m00380
TID=OsAffx.29030.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0455011/11hypothetical protein
LOC_Os12g202901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04540Os.27876.1.S1_x_at11/118+2249663..2251528Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04550OsAffx.29030.1.S1_at11/118+2259647..2260465hypothetical protein
LOC_Os08g04560OsAffx.5702.1.S1_s_at11/118+2262107..2264224Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04560Os.27876.1.S1_x_at3/118+2262107..2264224Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04570OsAffx.29031.2.S1_at11/118+2274231..2276255hypothetical protein
LOC_Os08g04580OsAffx.29031.1.S1_at11/118+2277339..2279865csAtPR5, putative, expressed
LOC_Os08g04590OsAffx.16827.1.S1_at11/118+2283046..2287271csAtPR5, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29030.1.S1_at--1135--5731Chr08:2259921..2259945 (25 bp)
GACGTGGCGGCAGAGACGTTCGCGG
LOC_Os08g04550
OsAffx.29030.1.S1_at--430--1511Chr08:2259954..2259978 (25 bp)
AGCACCGCTGCGAGCACAACATCGT
LOC_Os08g04550
OsAffx.29030.1.S1_at--944--4612Chr12:11849744..11849877 (24 bp)
GCGAGCACAACATCGTCAGCGGCGG
LOC_Os12g20290
OsAffx.29030.1.S1_at--819--671Chr08:2260008..2260032 (25 bp)
ATGAAAGCGCACACGAGAATCGGGT
LOC_Os08g04550
OsAffx.29030.1.S1_at--24--10051Chr08:2260032..2260056 (25 bp)
TAGGGCGTCTGATGGAGGCCACGGG
LOC_Os08g04550
OsAffx.29030.1.S1_at--832--7371Chr08:2260143..2260167 (25 bp)
GTGACCCGTCACTCTGGCGGGCACT
LOC_Os08g04550
OsAffx.29030.1.S1_at--798--2631Chr08:2260181..2260205 (25 bp)
AACCACCTTGCGCACTTAATGTCGT
LOC_Os08g04550
OsAffx.29030.1.S1_at--1100--1731Chr08:2260185..2260209 (25 bp)
ACCTTGCGCACTTAATGTCGTGGGA
LOC_Os08g04550
OsAffx.29030.1.S1_at--448--2051Chr08:2260194..2260218 (25 bp)
ACTTAATGTCGTGGGACGCGCTGAC
LOC_Os08g04550
OsAffx.29030.1.S1_at--139--1771Chr08:2260259..2260283 (25 bp)
ACCTGCACGACATTTGTGCCATCTG
LOC_Os08g04550
OsAffx.29030.1.S1_at--216--10811Chr08:2260272..2260296 (25 bp)
TTGTGCCATCTGCACGTCCGCCGTG
LOC_Os08g04550
Target Sequence 
GACGTGGCGGCAGAGACGTTCGCGGTCCAGGCGAGCACCGCTGCGAGCACAACATCGTCAGCGGCGGCGAGGAGCGCGGT
GGGGGTGATGAAAGCGCACACGAGAATCGGGTAGGGCGTCTGATGGAGGCCACGGGGCGGACGGAGGAAGACGAGCGCGT
AGACGGAGAAGGGGAGCATGAAGAGGAGCGCATCGTGGCCGAGCGAGAAGGCCATGCCGCCGGTGACCCGTCACTCTGGC
GGGCACTCAACCTGCTCCACAACCACCTTGCGCACTTAATGTCGTGGGACGCGCTGACGGAGGCACTCGCGCGTCTCCAC
GACGACGTCCGCCGCCGCACCTGCACGACATTTGTGCCATCTGCACGTCCGCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis