Browse Element(s) Details


OsAffx.29076.1.S1_s_at

Description tigr:9636.m00665
TID=OsAffx.29076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HAD-superfamily hydrolase, subfamily IA, variant 1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0730011/11haloacid dehalogenase-like hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07260OsAffx.5734.1.S1_at11/118+4046809..4048291O-methyltransferase family protein
LOC_Os08g07270OsAffx.16872.1.S1_at11/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07270OsAffx.16870.1.S1_x_at1/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07280Os.52466.1.S1_at11/118+4059640..4062930expressed protein
LOC_Os08g07290Os.57432.1.S1_a_at11/118+4063464..4071319HEAT repeat family protein, expressed
LOC_Os08g07300Os.6557.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300OsAffx.29076.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300Os.53790.1.S1_at10/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07320OsAffx.29078.1.S1_at11/118+4092169..4095042expressed protein
LOC_Os08g07330OsAffx.5737.1.S1_x_at11/118+4099054..4103614NB-ARC domain containing protein, expressed
LOC_Os08g07340OsAffx.5737.3.S1_at11/118+4105524..4109073NB-ARC domain containing protein
LOC_Os08g07340OsAffx.5737.1.S1_x_at1/118+4105524..4109073NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29076.1.S1_s_at--1116--6191Chr08:4072973..4072997 (25 bp)
GAGGCAACCGAATGCACCAATAATG
LOC_Os08g07300
OsAffx.29076.1.S1_s_at--11--6091Chr08:4073507..4073530 (24 bp)
GAGTATTACGCTCATGGAGATGCAT
LOC_Os08g07300
OsAffx.29076.1.S1_s_at--855--831Chr08:4073519..4073543 (25 bp)
ATGGAGATGCATGGCGTCTGCCTGC
LOC_Os08g07300
OsAffx.29076.1.S1_s_at--286--7591Chr08:4073546..4073570 (25 bp)
GGGCTTACGAAACACTGCGTGATCT
LOC_Os08g07300
OsAffx.29076.1.S1_s_at--846--2451Chr08:4073556..4073580 (25 bp)
AACACTGCGTGATCTAAAGGATGCT
LOC_Os08g07300
OsAffx.29076.1.S1_s_at--407--8031Chr08:4073710..4073732 (23 bp)
GGAGTTAAGCTAGCTGTTGTATCTA
LOC_Os08g07300
OsAffx.29076.1.S1_s_at--1022--6631Chr08:4073723..4073747 (25 bp)
GTTGTATCTAACTTCGACACACGGT
LOC_Os08g07300
OsAffx.29076.1.S1_s_at--515--9351Chr08:4073736..4073760 (25 bp)
TCGACACACGGTTACGAAAATTACT
LOC_Os08g07300
OsAffx.29076.1.S1_s_at--53--2051Chr08:4073758..4073782 (25 bp)
ACTTAAGGACCTTCATGTCTCGGAT
LOC_Os08g07300
OsAffx.29076.1.S1_s_at--1069--8711Chr08:4073773..4073890 (25 bp)
TGTCTCGGATATGTTTGATGCCATT
LOC_Os08g07300
OsAffx.29076.1.S1_s_at--860--9191Chr08:4073884..4073908 (25 bp)
TGCCATTGTTGTATCATCGGAGGTT
LOC_Os08g07300
Target Sequence 
GAGGCAACCGAATGCACCAATAATGATTATTTCGAAGAAGTATATGAGTATTACGCTCATGGAGATGCATGGCGTCTGCC
TGCTGGGGCTTACGAAACACTGCGTGATCTAAAGGATGCTGGAGTTAAGCTAGCTGTTGTATCTAACTTCGACACACGGT
TACGAAAATTACTTAAGGACCTTCATGTCTCGGATATGTTTGATGCCATTGTTGTATCATCGGAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29076.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis