Browse Element(s) Details


OsAffx.29098.1.S1_at

Description tigr:9636.m00775
TID=OsAffx.29098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0825011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08210Os.18478.1.S1_at10/118+4684772..4690386SET domain-containing protein, putative, expressed
LOC_Os08g08220Os.33780.1.S1_a_at11/118+4694324..4702018SNF2 family N-terminal domain containing protein, expressed
LOC_Os08g08220Os.33780.2.S1_x_at11/118+4694324..4702018SNF2 family N-terminal domain containing protein, expressed
LOC_Os08g08230NANA8+4702894..4703865Kinesin, putative, expressed
LOC_Os08g08240NANA8+4706637..4710786hAT family dimerisation domain containing protein, expressed
LOC_Os08g08250OsAffx.29098.1.S1_at11/118+4712480..4712787hypothetical protein
LOC_Os08g08260OsAffx.5747.1.S1_at11/118+4721424..4722716hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29098.1.S1_at--349--2231Chr08:4712514..4712538 (25 bp)
ACAAGGCCATGATTGCGCACGCCTG
LOC_Os08g08250
OsAffx.29098.1.S1_at--853--3511Chr08:4712521..4712545 (25 bp)
CATGATTGCGCACGCCTGGCACGAC
LOC_Os08g08250
OsAffx.29098.1.S1_at--393--4471Chr08:4712534..4712558 (25 bp)
GCCTGGCACGACGACGGATCTTGCG
LOC_Os08g08250
OsAffx.29098.1.S1_at--1124--1851Chr08:4712541..4712565 (25 bp)
ACGACGACGGATCTTGCGGAAGCTC
LOC_Os08g08250
OsAffx.29098.1.S1_at--58--1931Chr08:4712547..4712571 (25 bp)
ACGGATCTTGCGGAAGCTCCGGCGC
LOC_Os08g08250
OsAffx.29098.1.S1_at--736--4631Chr08:4712576..4712600 (25 bp)
GCGATTGCCGCGGAGACCACGCAGA
LOC_Os08g08250
OsAffx.29098.1.S1_at--800--71Chr08:4712579..4712603 (25 bp)
ATTGCCGCGGAGACCACGCAGACGG
LOC_Os08g08250
OsAffx.29098.1.S1_at--261--5791Chr08:4712608..4712632 (25 bp)
GACGACTGAGGCGCGCATTTCCGGT
LOC_Os08g08250
OsAffx.29098.1.S1_at--164--4151Chr08:4712619..4712639 (21 bp)
CGCGCATTTCCGGTGAGGTCACAAG
LOC_Os08g08250
OsAffx.29098.1.S1_at--197--10271Chr08:4712625..4712696 (25 bp)
TTTCCGGTGAGGTCACAAGAAGGGA
LOC_Os08g08250
OsAffx.29098.1.S1_at--1121--8351Chr08:4712732..4712756 (25 bp)
GGCGTGCGATCGAGTTTGCGCTTAA
LOC_Os08g08250
Target Sequence 
ACAAGGCCATGATTGCGCACGCCTGGCACGACGACGGATCTTGCGGAAGCTCCGGCGCGGCGGCGATTGCCGCGGAGACC
ACGCAGACGGCGCCGACGACTGAGGCGCGCATTTCCGGTGAGGTCACAAGAAGGGAGAAGGAACAAAGAGGGAGAGGCGT
AGTAGGGAGTAGGCGTGCGATCGAGTTTGCGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis