Browse Element(s) Details


OsAffx.29146.4.S1_s_at

Description tigr:9636.m01153
TID=OsAffx.29146.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1184011/11hypothetical protein
LOC_Os08g1114011/11hypothetical protein
LOC_Os08g282902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g11800Os.45173.1.S1_x_at4/118+6913884..6920437retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11810OsAffx.16946.1.S1_at2/118+6921721..6924765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11820OsAffx.22896.1.S1_x_at1/118+6924906..6926474transposon protein, putative, unclassified
LOC_Os08g11830Os.23638.1.A1_x_at1/118+6928635..6932944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11840OsAffx.29146.4.S1_s_at11/118+6936014..6936745hypothetical protein
LOC_Os08g11840OsAffx.29146.5.S1_at4/118+6936014..6936745hypothetical protein
LOC_Os08g11840OsAffx.29146.5.S1_x_at3/118+6936014..6936745hypothetical protein
LOC_Os08g11850OsAffx.22947.1.S1_x_at1/118+6942984..6947429retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11860OsAffx.31869.5.S1_x_at4/118+6950690..6951451retrotransposon protein, putative, unclassified
LOC_Os08g11860OsAffx.31869.1.S1_at4/118+6950690..6951451retrotransposon protein, putative, unclassified
LOC_Os08g11860OsAffx.31869.4.S1_x_at1/118+6950690..6951451retrotransposon protein, putative, unclassified
LOC_Os08g11870NANA8+6954896..6956176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g11880OsAffx.29146.3.S1_s_at11/118+6959038..6960790hypothetical protein
LOC_Os08g11880OsAffx.29146.1.S1_x_at11/118+6959038..6960790hypothetical protein
LOC_Os08g11880OsAffx.29146.2.S1_x_at1/118+6959038..6960790hypothetical protein
LOC_Os08g11890OsAffx.29160.1.S1_at11/118+6961399..6963349hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29146.4.S1_s_at--950--1313Chr08:6542256..6542280 (25 bp)
AGAGGCCCTCAAGGCAGAGGCGAAT
LOC_Os08g11140
OsAffx.29146.4.S1_s_at--442--8413Chr08:6542259..6542283 (25 bp)
GGCCCTCAAGGCAGAGGCGAATGCC
LOC_Os08g11140
OsAffx.29146.4.S1_s_at--345--4292Chr08:6542262..6542286 (25 bp)
CCTCAAGGCAGAGGCGAATGCCGAG
LOC_Os08g11140
OsAffx.29146.4.S1_s_at--156--4772Chr08:6542529..6542553 (25 bp)
GCTGCAGCAGTTTGGGTGCGAGCAC
LOC_Os08g11140
OsAffx.29146.4.S1_s_at--344--872Chr08:6542591..6542615 (25 bp)
AGGTCAGTTCTCAGGAGGTTTCGCC
LOC_Os08g11140
OsAffx.29146.4.S1_s_at--464--7812Chr08:6542592..6542616 (25 bp)
GGTCAGTTCTCAGGAGGTTTCGCCT
LOC_Os08g11140
OsAffx.29146.4.S1_s_at--862--7112Chr08:6542593..6542617 (25 bp)
GTCAGTTCTCAGGAGGTTTCGCCTG
LOC_Os08g11140
OsAffx.29146.4.S1_s_at--1010--3432Chr08:6542595..6542619 (25 bp)
CAGTTCTCAGGAGGTTTCGCCTGCA
LOC_Os08g11140
OsAffx.29146.4.S1_s_at--323--1232Chr08:6542596..6542620 (25 bp)
AGTTCTCAGGAGGTTTCGCCTGCAC
LOC_Os08g11140
OsAffx.29146.4.S1_s_at--438--6732Chr08:6542597..6542621 (25 bp)
GTTCTCAGGAGGTTTCGCCTGCACT
LOC_Os08g11140
OsAffx.29146.4.S1_s_at--971--10572Chr08:6542598..6542622 (25 bp)
TTCTCAGGAGGTTTCGCCTGCACTT
LOC_Os08g11140
Target Sequence 
AGAGGCCCTCAAGGCAGAGGCGAATGCCGAGAAGGAGGCGCAACGGTTCGCGCGGGAGATGGCGAAAGCCACCGAATCCG
CCAAAACCGTGTGCCCCTTCACCATGGGCCTGCTGCAGCAGTTTGGGTGCGAGCACATCGCCAAGTTCCCCAACTTTGCG
AAGGGGGACTGGGAGGTCAGTTCTCAGGAGGTTTCGCCTGCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29146.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis