Browse Element(s) Details


OsAffx.29166.1.S1_at

Description tigr:9636.m01263
TID=OsAffx.29166.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1285011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12820Os.15239.1.S1_at11/118+7585220..7590670Proteasome/cyclosome repeat family protein, expressed
LOC_Os08g12830Os.46126.1.S1_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.46126.1.S1_x_at7/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12830Os.5970.1.S1_at4/118+7599275..7603867Cytidylyltransferase family protein, expressed
LOC_Os08g12840OsAffx.30522.1.S1_at11/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840OsAffx.29165.1.S1_at10/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12840Os.47868.1.S1_at8/118+7604353..7608465beta-hydroxyacyl- dehydratase FabZ containing protein, expressed
LOC_Os08g12850Os.11196.1.S1_at11/118+7610445..7613923pentatricopeptide, putative, expressed
LOC_Os08g12850OsAffx.29166.1.S1_at11/118+7610445..7613923pentatricopeptide, putative, expressed
LOC_Os08g12860NANA8+7619859..7621711transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12870Os.47463.1.S1_x_at6/118+7623934..7627631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12870Os.14491.2.S1_x_at5/118+7623934..7627631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g12880Os.26886.3.S1_x_at6/118+7637210..7639960transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29166.1.S1_at--1051--8611Chr08:7613799..7613823 (25 bp)
TGGTGTACTACCACTGCGCGGTGCG
LOC_Os08g12850
OsAffx.29166.1.S1_at--420--451Chr08:7611677..7611696 (20 bp)
ATCTCGGTGCCCGTGGATCCTCTTG
LOC_Os08g12850
OsAffx.29166.1.S1_at--411--6371Chr08:7611662..7611686 (25 bp)
GATCCTCTTGAATGGCAGATTTCTC
LOC_Os08g12850
OsAffx.29166.1.S1_at--1010--5031Chr08:7611648..7611672 (25 bp)
GCAGATTTCTCAAGAGATGGCGAAT
LOC_Os08g12850
OsAffx.29166.1.S1_at--295--8471Chr08:7611631..7611655 (25 bp)
TGGCGAATAGTATAGTTGCATCCTT
LOC_Os08g12850
OsAffx.29166.1.S1_at--143--291Chr08:7611620..7611644 (25 bp)
ATAGTTGCATCCTTGGCTAACACAA
LOC_Os08g12850
OsAffx.29166.1.S1_at--208--8311Chr08:7611606..7611630 (25 bp)
GGCTAACACAATCGGAGCTGCTGAA
LOC_Os08g12850
OsAffx.29166.1.S1_at--1160--1571Chr08:7611591..7611615 (25 bp)
AGCTGCTGAATCTGTATTGAGGGTG
LOC_Os08g12850
OsAffx.29166.1.S1_at--648--3051Chr08:7611583..7611607 (25 bp)
AATCTGTATTGAGGGTGGCTGCGAC
LOC_Os08g12850
OsAffx.29166.1.S1_at--35--7551Chr08:7611569..7611593 (25 bp)
GTGGCTGCGACTGGACATGATAAGA
LOC_Os08g12850
OsAffx.29166.1.S1_at--85--6471Chr08:7611555..7611575 (21 bp)
GATAAGAAGCTCTTTTTCAAGCCTG
LOC_Os08g12850
Target Sequence 
TGGTGTACTACCACTGCGCGGTGCGGCGGGCCAGCGCGGTGTCGCTCGCCGCCGACGTGCTCCTCGTCCTCCTCTGCTCG
CTCTCCATCCTCGGCCTCCTCTTCCGCCACCTCCACATCTCGGTGCCCGTGGATCCTCTTGAATGGCAGATTTCTCAAGA
GATGGCGAATAGTATAGTTGCATCCTTGGCTAACACAATCGGAGCTGCTGAATCTGTATTGAGGGTGGCTGCGACTGGAC
ATGATAAGAAGCTCTTTTTCAAGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis