Browse Element(s) Details


OsAffx.29176.1.S1_at

Description tigr:9636.m01307
TID=OsAffx.29176.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1325011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13210OsAffx.24284.5.A1_at1/118+7848746..7851377hypothetical protein
LOC_Os08g13219OsAffx.26691.1.S1_at4/118+7854708..7855378hypothetical protein
LOC_Os08g13230OsAffx.5801.1.S1_at11/118+7857946..7858422hypothetical protein
LOC_Os08g13240Os.40360.1.S1_x_at1/118+7862515..7863765hypothetical protein
LOC_Os08g13250OsAffx.29176.1.S1_at11/118+7872886..7875334BTB/POZ domain containing protein
LOC_Os08g13259NANA8+7883340..7884451NA
LOC_Os08g13270Os.52143.1.S1_at3/118+7886057..7887702expressed protein
LOC_Os08g13270OsAffx.10952.2.S1_at1/118+7886057..7887702expressed protein
LOC_Os08g13280Os.8568.1.S1_at1/118+7888628..7889559expressed protein
LOC_Os08g13290NANA8+7891520..7894851transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13300Os.14491.2.S1_x_at4/118+7896323..7901427transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13300Os.47463.1.S1_x_at3/118+7896323..7901427transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29176.1.S1_at--1080--6071Chr08:7873600..7873624 (25 bp)
GAGTATCTACAAGACGTTCGCCTCG
LOC_Os08g13250
OsAffx.29176.1.S1_at--609--3051Chr08:7873574..7873598 (25 bp)
AATCGAGTGCGATGTCATGCCATTA
LOC_Os08g13250
OsAffx.29176.1.S1_at--481--9491Chr08:7873507..7873531 (25 bp)
TCTCCTTGGTCGCAACTGTCAGAAG
LOC_Os08g13250
OsAffx.29176.1.S1_at--693--1831Chr08:7873240..7873262 (23 bp)
ACGCTCCACTTTGAACACCATTGAT
LOC_Os08g13250
OsAffx.29176.1.S1_at--572--8851Chr08:7873219..7873243 (25 bp)
TGATCGTGTCGCTAGCACCATAAGA
LOC_Os08g13250
OsAffx.29176.1.S1_at--73--3251Chr08:7873138..7873162 (25 bp)
CAAGCATCTGCTCATTACCGTGGAT
LOC_Os08g13250
OsAffx.29176.1.S1_at--331--151Chr08:7873125..7873149 (25 bp)
ATTACCGTGGATCGCTATGCTATCG
LOC_Os08g13250
OsAffx.29176.1.S1_at--826--5771Chr08:7873090..7873114 (25 bp)
GACGATGCTCGAAGACGGACTCTGC
LOC_Os08g13250
OsAffx.29176.1.S1_at--589--7791Chr08:7873063..7873087 (25 bp)
GGTCCTTAGCTTAGGCAACGTCAAG
LOC_Os08g13250
OsAffx.29176.1.S1_at--730--6031Chr08:7873038..7873062 (25 bp)
GAGATGTTTGCCCTAACTGATCAGC
LOC_Os08g13250
OsAffx.29176.1.S1_at--951--10391Chr08:7872985..7873009 (25 bp)
TTTTGAATTTATCACCTCCTCATCG
LOC_Os08g13250
Target Sequence 
GAGTATCTACAAGACGTTCGCCTCGTAATCGAGTGCGATGTCATGCCATTAGTAAGGATCGAAGCGATCGCGGAAATCAT
CCGATCACCTTCTTCTCCTTGGTCGCAACTGTCAGAAGACATTGGCAAGCTGCTAGAGATGGAGACCGGACGGAGCCGAC
GTGAGCTTCAAGGTCAACGCTCCACTTTGAACACCATTGATCGTGTCGCTAGCACCATAAGACGGGCCAATGAGAGGGAA
GAGAAATATCTCGGTGAAGAAGAGAGGAAGGAGTTGATCAAGCATCTGCTCATTACCGTGGATCGCTATGCTATCGAGGG
GTTGAAGACGATGCTCGAAGACGGACTCTGCAAGGTCCTTAGCTTAGGCAACGTCAAGGAGATGTTTGCCCTAACTGATC
AGCATGATTGCAGCATATTGAAGGATGTGTGTTTTGAATTTATCACCTCCTCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis