Browse Element(s) Details


OsAffx.29210.1.S1_at

Description tigr:9636.m01495
TID=OsAffx.29210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1493011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14880Os.21862.1.S1_at11/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14880Os.35093.1.A1_x_at3/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14880OsAffx.29842.3.S1_x_at1/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14890OsAffx.5818.1.S1_at11/118+8968896..8970845expressed protein
LOC_Os08g14900NANA8+8971186..8972365expressed protein
LOC_Os08g14910OsAffx.29209.1.S1_at10/118+8976912..8979045hypothetical protein
LOC_Os08g14920NANA8+8984466..8984795hypothetical protein
LOC_Os08g14930OsAffx.29210.1.S1_at11/118+8986307..8987469hypothetical protein
LOC_Os08g14940OsAffx.14481.1.S1_at1/118+8995491..8998748Leucine Rich Repeat family protein
LOC_Os08g14950NANA8+9010613..9014000Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29210.1.S1_at--619--9631Chr08:8987197..8987221 (25 bp)
TCAGTGGCTTGGGTTCTTTTTGGTC
LOC_Os08g14930
OsAffx.29210.1.S1_at--559--9551Chr08:8987211..8987235 (25 bp)
TCTTTTTGGTCTCCCCAAATCAGAG
LOC_Os08g14930
OsAffx.29210.1.S1_at--844--10851Chr08:8987216..8987240 (25 bp)
TTGGTCTCCCCAAATCAGAGCACAA
LOC_Os08g14930
OsAffx.29210.1.S1_at--951--5291Chr08:8987293..8987317 (25 bp)
GAAGGAATGGCTCAATTCTTGATCA
LOC_Os08g14930
OsAffx.29210.1.S1_at--520--10551Chr08:8987308..8987332 (25 bp)
TTCTTGATCATTTTGGTCGCTTGGG
LOC_Os08g14930
OsAffx.29210.1.S1_at--25--7791Chr08:8987322..8987346 (25 bp)
GGTCGCTTGGGAAATCTGGAAACAT
LOC_Os08g14930
OsAffx.29210.1.S1_at--1020--1811Chr08:8987357..8987381 (25 bp)
ACGCATTTAATGTTGCTACCTCCAA
LOC_Os08g14930
OsAffx.29210.1.S1_at--182--731Chr08:8987366..8987390 (25 bp)
ATGTTGCTACCTCCAATATTGAGGA
LOC_Os08g14930
OsAffx.29210.1.S1_at--805--6191Chr08:8987386..8987410 (25 bp)
GAGGAAGTCCTTCCTGCTATTGCTA
LOC_Os08g14930
OsAffx.29210.1.S1_at--534--2851Chr08:8987390..8987414 (25 bp)
AAGTCCTTCCTGCTATTGCTAGGGA
LOC_Os08g14930
OsAffx.29210.1.S1_at--1040--3631Chr08:8987395..8987419 (25 bp)
CTTCCTGCTATTGCTAGGGAGGGCG
LOC_Os08g14930
Target Sequence 
TCAGTGGCTTGGGTTCTTTTTGGTCTCCCCAAATCAGAGCACAAGGAAGAGAAAAGAAGATGAAGGAATGGCTCAATTCT
TGATCATTTTGGTCGCTTGGGAAATCTGGAAACATAGAAATGAATACGCATTTAATGTTGCTACCTCCAATATTGAGGAA
GTCCTTCCTGCTATTGCTAGGGAGGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis