Browse Element(s) Details


OsAffx.29222.1.S1_x_at

Description tigr:9636.m01573
TID=OsAffx.29222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1568010/11hypothetical protein
LOC_Os06g312401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15639NANA8+9494397..9495652NA
LOC_Os08g15650Os.49502.1.S1_at11/118+9500942..9502205expressed protein
LOC_Os08g15660NANA8+9503997..9509070transposon protein, putative, unclassified
LOC_Os08g15670OsAffx.8916.1.S1_at2/118+9510238..9511811hypothetical protein
LOC_Os08g15680OsAffx.29222.1.S1_x_at10/118+9516158..9517349hypothetical protein
LOC_Os08g15680OsAffx.29222.1.S1_at9/118+9516158..9517349hypothetical protein
LOC_Os08g15690NANA8+9519569..9521147retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15700NANA8+9521896..9524495retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15710Os.17758.1.A1_at10/118+9531782..9533413expressed protein
LOC_Os08g15720NANA8+9537563..9539377retrotransposon protein, putative, LINE subclass
LOC_Os08g15730OsAffx.29223.1.S1_at11/118+9541058..9541267hypothetical protein
LOC_Os08g15740NANA8+9541644..9543134hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29222.1.S1_x_at--890--7691Chr08:9517275..9517299 (25 bp)
GGAGGACGGTACTCTCCCTGGTTGC
LOC_Os08g15680
OsAffx.29222.1.S1_x_at--929--931Chr08:9517273..9517297 (25 bp)
AGGACGGTACTCTCCCTGGTTGCGG
LOC_Os08g15680
OsAffx.29222.1.S1_x_at--777--7831Chr08:9517268..9517292 (25 bp)
GGTACTCTCCCTGGTTGCGGGACCA
LOC_Os08g15680
OsAffx.29222.1.S1_x_at--959--9892Chr06:18171077..18171097 (21 bp)
TACTCTCCCTGGTTGCGGGACCATG
LOC_Os06g31240
OsAffx.29222.1.S1_x_at--445--5971Chr07:10888012..10888419 (25 bp)
GAGAACCAGGAGTCTTTGTTGTTCC
NONE
OsAffx.29222.1.S1_x_at--921--8811Chr08:9516837..9516861 (25 bp)
TGTTGTTCCTGAGAAGCAACCAGAC
LOC_Os08g15680
OsAffx.29222.1.S1_x_at--1082--531Chr08:9516809..9516833 (25 bp)
ATCCCAGAATGGACCGCCAAGCCCA
LOC_Os08g15680
OsAffx.29222.1.S1_x_at--243--1051Chr08:9516487..9516511 (25 bp)
AGGTGATGATCAGCAGCCCTACGAC
LOC_Os08g15680
OsAffx.29222.1.S1_x_at--661--891Chr08:9516424..9516448 (25 bp)
AGGCCGATCGTGAGGCTGCGATCAA
LOC_Os08g15680
OsAffx.29222.1.S1_x_at--547--4051Chr08:9516422..9516444 (23 bp)
CGATCGTGAGGCTGCGATCAATGCT
LOC_Os08g15680
OsAffx.29222.1.S1_x_at--218--8891Chr08:9516347..9516438 (25 bp)
TGAGGCTGCGATCAATGCTCTTCCT
LOC_Os08g15680
Target Sequence 
GGAGGACGGTACTCTCCCTGGTTGCGGGACCATGGAGAGAGAACCAGGAGTCTTTGTTGTTCCTGAGAAGCAACCAGACA
AGATCCCAGAATGGACCGCCAAGCCCACCCTAACTCCCTCCCTTCAGTCTTTCATCGATATCATCGATGACCTCCGAGTA
CGAGGGTTGTCGGGATATGAAGTCGCTGCCGACTTCATCGGTTTAAACAGCGAAACTGTGGAGCGCCGCGTTGGTCAGGT
GATGATCAGCAGCCCTACGACGGCGAGCAACGTCCCCGTCCCCCTTTGCGAGAAGGGGAAGGCCGATCGTGAGGCTGCGA
TCAATGCTCTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29222.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis