Browse Element(s) Details


Os.49502.1.S1_at

Description gb:AK105511.1
DB_XREF= gi:32990720
TID=Os.49502.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-E06, full insert sequence.
FL= gb:AK105511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1565011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15610OsAffx.29220.1.S1_at11/118+9478018..9478773hypothetical protein
LOC_Os08g15620Os.55229.1.S1_s_at1/118+9478887..9479945hypothetical protein
LOC_Os08g15630NANA8+9486898..9487758hypothetical protein
LOC_Os08g15639NANA8+9494397..9495652NA
LOC_Os08g15650Os.49502.1.S1_at11/118+9500942..9502205expressed protein
LOC_Os08g15660NANA8+9503997..9509070transposon protein, putative, unclassified
LOC_Os08g15670OsAffx.8916.1.S1_at2/118+9510238..9511811hypothetical protein
LOC_Os08g15680OsAffx.29222.1.S1_x_at10/118+9516158..9517349hypothetical protein
LOC_Os08g15680OsAffx.29222.1.S1_at9/118+9516158..9517349hypothetical protein
LOC_Os08g15690NANA8+9519569..9521147retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15700NANA8+9521896..9524495retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49502.1.S1_at--1121--3511Chr08:9501402..9501426 (25 bp)
CATGAGCGGCAAGAACGCGCAGGCC
LOC_Os08g15650
Os.49502.1.S1_at--1085--3971Chr08:9501331..9501355 (25 bp)
CGGTGTACACGCTCGCGCTCAGGTG
LOC_Os08g15650
Os.49502.1.S1_at--1145--7091Chr08:9501218..9501242 (25 bp)
GTCACGGCGTACTACTTCGAGTGCA
LOC_Os08g15650
Os.49502.1.S1_at--163--3251Chr08:9501141..9501165 (25 bp)
CAAGCTCTCTAATGGCGACGAGGCA
LOC_Os08g15650
Os.49502.1.S1_at--23--8351Chr08:9501128..9501152 (25 bp)
GGCGACGAGGCAAACATTTGACCAA
LOC_Os08g15650
Os.49502.1.S1_at--855--211Chr08:9501101..9501125 (25 bp)
ATTTGTGAATTTTTCTCTCTTCCGA
LOC_Os08g15650
Os.49502.1.S1_at--16--10591Chr08:9501089..9501113 (25 bp)
TTCTCTCTTCCGAATTCATTGTATG
LOC_Os08g15650
Os.49502.1.S1_at--593--7671Chr08:9501024..9501048 (25 bp)
GGGATTGACATTGCAAATTCCATAC
LOC_Os08g15650
Os.49502.1.S1_at--1003--3151Chr08:9501009..9501033 (25 bp)
AATTCCATACAAACCTTCAAGCAAG
LOC_Os08g15650
Os.49502.1.S1_at--1017--5491Chr08:9500984..9501008 (25 bp)
GAACAGTAGTACCATAGCAATATCA
LOC_Os08g15650
Os.49502.1.S1_at--217--2091Chr08:9500955..9500979 (25 bp)
ACATCTATGCCTACATTTTAGTGTG
LOC_Os08g15650
Target Sequence 
CATGAGCGGCAAGAACGCGCAGGCCGTGCTCTACGTCGTCGCCACGTTCGCGCTCGCCGCCGCGGTCTCGCCGGTGTACA
CGCTCGCGCTCAGGTGGTGGCCTCGCAGCGCGCCGGCCGGCATCGCCGCCGGCGTCGCGTACGTGCTCCTCCTCGGCGCC
GTCGAGGTGTTCTCCGTCGCCTCCGTCACGGCGTACTACTTCGAGTGCAGGGAGATGAAGCAGGTGGAAGAAGACATGGC
GGCGGGTCACCACCACTACACCAAGCTCTCTAATGGCGACGAGGCAAACATTTGACCAAACATTTGTGAATTTTTCTCTC
TTCCGAATTCATTGTATGAGTAGTGTTTGATAGATGCTACTACTAATATTCTTACATTGGGATTGACATTGCAAATTCCA
TACAAACCTTCAAGCAAGGAACAGTAGTACCATAGCAATATCATGTTACATCTATGCCTACATTTTAGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis