Browse Element(s) Details


OsAffx.29224.1.S1_at

Description tigr:9636.m01583
TID=OsAffx.29224.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1577010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15700NANA8+9521896..9524495retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15710Os.17758.1.A1_at10/118+9531782..9533413expressed protein
LOC_Os08g15720NANA8+9537563..9539377retrotransposon protein, putative, LINE subclass
LOC_Os08g15730OsAffx.29223.1.S1_at11/118+9541058..9541267hypothetical protein
LOC_Os08g15740NANA8+9541644..9543134hypothetical protein
LOC_Os08g15750Os.46314.3.S1_at2/118+9544777..9546437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15760NANA8+9547078..9547593transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15770OsAffx.29224.1.S1_at10/118+9548699..9550001hypothetical protein
LOC_Os08g15780OsAffx.29225.1.S1_at11/118+9553402..9554100DC1 domain-containing protein, putative
LOC_Os08g15790NANA8+9559878..9560324hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29224.1.S1_at--685--10471Chr08:9549255..9549279 (25 bp)
TTACTAGGGAGTCATGGACAGATAC
LOC_Os08g15770
OsAffx.29224.1.S1_at--512--5651Chr08:9549271..9549295 (25 bp)
GACAGATACTGGAGGCTTCACCTGT
LOC_Os08g15770
OsAffx.29224.1.S1_at--180--1271Chr08:9549274..9549298 (25 bp)
AGATACTGGAGGCTTCACCTGTTCC
LOC_Os08g15770
OsAffx.29224.1.S1_at--1156--311Chr08:9549276..9549300 (25 bp)
ATACTGGAGGCTTCACCTGTTCCAG
LOC_Os08g15770
OsAffx.29224.1.S1_at--407--9232Chr08:9549296..9549320 (25 bp)
TCCAGGCATGGAGCTATCGTGCTGC
LOC_Os08g15770
OsAffx.29224.1.S1_at--604--3471Chr08:9549298..9549322 (25 bp)
CAGGCATGGAGCTATCGTGCTGCAT
LOC_Os08g15770
OsAffx.29224.1.S1_at--1053--3491Chr08:9549302..9549326 (25 bp)
CATGGAGCTATCGTGCTGCATGCGT
LOC_Os08g15770
OsAffx.29224.1.S1_at--1057--5772Chr08:9549337..9549358 (22 bp)
GACGACTCCAACGTTGGAGAGGATT
LOC_Os08g15770
OsAffx.29224.1.S1_at--549--9211NONE
TCCAACGTTGGAGAGGATTAACGAT
NONE
OsAffx.29224.1.S1_at--792--6151Chr08:9549915..9549938 (24 bp)
GAGGATTAACGATGTTACTGTTGCT
LOC_Os08g15770
OsAffx.29224.1.S1_at--696--4771Chr08:9549936..9549960 (25 bp)
GCTGCTGATCATGGAATAGAAGAAA
LOC_Os08g15770
Target Sequence 
TTACTAGGGAGTCATGGACAGATACTGGAGGCTTCACCTGTTCCAGGCATGGAGCTATCGTGCTGCATGCGTGCTGTCGA
TCGACGACTCCAACGTTGGAGAGGATTAACGATGTTACTGTTGCTGCTGATCATGGAATAGAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis