Browse Element(s) Details


OsAffx.29225.1.S1_at

Description tigr:9636.m01584
TID=OsAffx.29225.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1578011/11DC1 domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15710Os.17758.1.A1_at10/118+9531782..9533413expressed protein
LOC_Os08g15720NANA8+9537563..9539377retrotransposon protein, putative, LINE subclass
LOC_Os08g15730OsAffx.29223.1.S1_at11/118+9541058..9541267hypothetical protein
LOC_Os08g15740NANA8+9541644..9543134hypothetical protein
LOC_Os08g15750Os.46314.3.S1_at2/118+9544777..9546437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15760NANA8+9547078..9547593transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15770OsAffx.29224.1.S1_at10/118+9548699..9550001hypothetical protein
LOC_Os08g15780OsAffx.29225.1.S1_at11/118+9553402..9554100DC1 domain-containing protein, putative
LOC_Os08g15790NANA8+9559878..9560324hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29225.1.S1_at--455--1491Chr08:9553901..9553925 (25 bp)
AGCACCCGCTGGTGGAGGGTATCAT
LOC_Os08g15780
OsAffx.29225.1.S1_at--169--1071Chr08:9553886..9553910 (25 bp)
AGGGTATCATGGAGCTCCGGCTCGT
LOC_Os08g15780
OsAffx.29225.1.S1_at--1102--1851Chr08:9553820..9553844 (25 bp)
ACGACGCGGTGCGAGGGTTCCACTA
LOC_Os08g15780
OsAffx.29225.1.S1_at--840--6671Chr08:9553760..9553784 (25 bp)
GTTGCGCCAAGATGCCGAGGTCCAT
LOC_Os08g15780
OsAffx.29225.1.S1_at--704--1731Chr08:9553719..9553743 (25 bp)
ACCATCTTCGATCTCCGGACGGAGG
LOC_Os08g15780
OsAffx.29225.1.S1_at--465--8891Chr08:9553550..9553574 (25 bp)
TGAGGATGATGGTCCGCCTACAAGA
LOC_Os08g15780
OsAffx.29225.1.S1_at--893--2211Chr08:9553531..9553555 (25 bp)
ACAAGAGCGTGCTGGCCGGAACGTT
LOC_Os08g15780
OsAffx.29225.1.S1_at--1161--10431Chr08:9553508..9553532 (25 bp)
TTAGGCTAGAGAGGCGCGTATGCAA
LOC_Os08g15780
OsAffx.29225.1.S1_at--1101--2371Chr08:9553484..9553508 (25 bp)
AAACGCTTGTGATCATGGTGCGCAT
LOC_Os08g15780
OsAffx.29225.1.S1_at--972--811Chr08:9553470..9553494 (25 bp)
ATGGTGCGCATCGTCTTCAGGCTGC
LOC_Os08g15780
OsAffx.29225.1.S1_at--1031--5811Chr08:9553437..9553461 (25 bp)
GACCCGACACCGATACTCACAGAAG
LOC_Os08g15780
Target Sequence 
AGCACCCGCTGGTGGAGGGTATCATGGAGCTCCGGCTCGTCGCCCCCACCGGCGGCGACGCCGTCCGCTGCGACGCCTGC
TACGACGCGGTGCGAGGGTTCCACTACCACAGCTCCACGAGTGGCGTGGACCTGCACCCAGGTTGCGCCAAGATGCCGAG
GTCCATCACGCTGCGGGGGGGCACCATCTTCGATCTCCGGACGGAGGTGTCTCACCGGTGCACCAGCTGCAAGGCGATGG
AGGGGTTCTACCGCCCATGGTTCTACCGCTCCGAAAACAACCCTGACCAACGCATGTACCTGCACGTCAAGTGCATCAAG
GAGATCCAGGACGCCGGCGACGACGACGAGGTGAGGATGATGGTCCGCCTACAAGAGCGTGCTGGCCGGAACGTTAGGCT
AGAGAGGCGCGTATGCAAAACGCTTGTGATCATGGTGCGCATCGTCTTCAGGCTGCTCATCGGGGACCCGACACCGATAC
TCACAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis