Browse Element(s) Details


OsAffx.29269.1.S1_at

Description tigr:9636.m01867
TID=OsAffx.29269.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1903011/11hypothetical protein
LOC_Os03g324601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19000OsAffx.5869.1.S1_at11/118+11333557..11336250hypothetical protein
LOC_Os08g19010Os.54523.1.S1_at1/118+11343073..11344136hypothetical protein
LOC_Os08g19010OsAffx.13987.1.S1_at1/118+11343073..11344136hypothetical protein
LOC_Os08g19020OsAffx.5870.1.S1_at11/118+11350287..11350880hypothetical protein
LOC_Os08g19030OsAffx.29269.1.S1_at11/118+11355391..11356794hypothetical protein
LOC_Os08g19040OsAffx.17067.1.S1_at11/118+11357517..11358381hypothetical protein
LOC_Os08g19050NANA8+11362595..11364229hypothetical protein
LOC_Os08g19060OsAffx.5871.1.S1_at11/118+11372447..11375356retrotransposon, putative, centromere-specific
LOC_Os08g19070OsAffx.22908.1.S1_at1/118+11377703..11377975hypothetical protein
LOC_Os08g19080NANA8+11381049..11383349Transposable element protein, putative, Retrotrans_gag

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29269.1.S1_at--88--1871Chr08:11356724..11356748 (25 bp)
ACGACCGCATTGGTGACCGGGAGAT
LOC_Os08g19030
OsAffx.29269.1.S1_at--328--2931Chr08:11356680..11356704 (25 bp)
AAGGACTGGACATTTGCTCACACCC
LOC_Os08g19030
OsAffx.29269.1.S1_at--1046--9692Chr08:11356663..11356687 (25 bp)
TCACACCCGAGCATATGATCCGCAA
LOC_Os08g19030
OsAffx.29269.1.S1_at--578--5831Chr08:11356647..11356671 (25 bp)
GATCCGCAACTTCTGCTAAAGATAG
LOC_Os08g19030
OsAffx.29269.1.S1_at--890--291Chr08:11355795..11355817 (23 bp)
ATAGCGCATATGTACGAGGCTGACT
LOC_Os08g19030
OsAffx.29269.1.S1_at--952--8551Chr08:11355748..11355772 (25 bp)
TGGATGGACCCAAGTGCCACACTAC
LOC_Os08g19030
OsAffx.29269.1.S1_at--383--2011Chr08:11355728..11355752 (25 bp)
ACTACAGCGCTGGAGGTTCAACCTG
LOC_Os08g19030
OsAffx.29269.1.S1_at--533--7532Chr12:13902705..13902727 (23 bp)
GTGGCAAGTGCCTCAAGACACATCA
NONE
OsAffx.29269.1.S1_at--67--5351Chr08:11355517..11355541 (25 bp)
GAACCTCGAAGGATACATGGCCCCG
LOC_Os08g19030
OsAffx.29269.1.S1_at--117--871Chr08:11355484..11355508 (25 bp)
ATGGCGGCGAAATGCTGATGCTCAA
LOC_Os08g19030
OsAffx.29269.1.S1_at--224--8931Chr08:11355421..11355445 (25 bp)
TGACCTACAGGCATATTTTCGCTTC
LOC_Os08g19030
Target Sequence 
ACGACCGCATTGGTGACCGGGAGATGGAAGCCTATAGGATGCTCAAGGACTGGACATTTGCTCACACCCGAGCATATGAT
CCGCAACTTCTGCTAAAGATAGCGCATATGTACGAGGCTGACTGGGAACCAACTGGGGATGCCCCTGGATGGACCCAAGT
GCCACACTACAGCGCTGGAGGTTCAACCTGGCAGAGTGCCGGTGAACACCAGTGGCAAGTGCCTCAAGACACATCACATG
AGAATTCCCATTCCTCCAACACCAGTGGCATGCCGCCAATCTCCAAGATGTGGAGCTCCAGTTCCTCTCGAGGGGACTTG
GGAGAGCTCACTAGGAGAATGGACACACTGGAGCTGCAAGCGGAAGAGATCCAGCAGAACCTCGAAGGATACATGGCCCC
GACGCAAGAATGGCGGCGAAATGCTGATGCTCAATTCGCCAACATCAACAAGCTGATGCAGCAACAGCAAGCTGACCTAC
AGGCATATTTTCGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis