Browse Element(s) Details


OsAffx.29330.1.S1_at

Description tigr:9636.m02410
TID=OsAffx.29330.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2461011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24570NANA8+14718925..14725598retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24580NANA8+14728711..14731793retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24590Os.47463.1.S1_x_at6/118+14738224..14741948transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24590Os.14491.2.S1_x_at4/118+14738224..14741948transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24600OsAffx.17131.1.S1_at11/118+14742476..14743156hypothetical protein
LOC_Os08g24610OsAffx.29330.1.S1_at11/118+14743508..14744566hypothetical protein
LOC_Os08g24620OsAffx.29331.1.S1_at10/118+14746184..14747111hypothetical protein
LOC_Os08g24630Os.27296.1.A1_at11/118+14753908..14755034serine/threonine protein kinase, putative, expressed
LOC_Os08g24640OsAffx.21897.5.S1_x_at2/118+14760302..14763243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24650NANA8+14763560..14769655retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29330.1.S1_at--579--3951Chr08:14744475..14744499 (25 bp)
CGGTGAACATCCAGGGCACGTCGTT
LOC_Os08g24610
OsAffx.29330.1.S1_at--733--8211Chr08:14744401..14744425 (25 bp)
GGAATACTTCTCCATGGCGCTGTAG
LOC_Os08g24610
OsAffx.29330.1.S1_at--935--1891Chr08:14744361..14744385 (25 bp)
ACGTCGCGGTCGTAGGTCGTCTTGA
LOC_Os08g24610
OsAffx.29330.1.S1_at--245--7211Chr08:14744346..14744370 (25 bp)
GTCGTCTTGACTTCTTGGCTGATAG
LOC_Os08g24610
OsAffx.29330.1.S1_at--1025--4331Chr08:14744281..14744305 (25 bp)
CCATGGCGTGGATTACTGCGTCGTC
LOC_Os08g24610
OsAffx.29330.1.S1_at--72--5931Chr08:14744255..14744279 (25 bp)
GAGCAGGCACGGTAGTCGCCAACAA
LOC_Os08g24610
OsAffx.29330.1.S1_at--213--7231Chr08:14744245..14744265 (21 bp)
GTCGCCAACAAGTGACGTGGTTTCT
LOC_Os08g24610
OsAffx.29330.1.S1_at--126--1431Chr08:14744079..14744103 (25 bp)
AGAAACGTATCTCCCAGGTACTGAA
LOC_Os08g24610
OsAffx.29330.1.S1_at--777--1011Chr08:14744064..14744088 (25 bp)
AGGTACTGAACTTACTCTTCCACTC
LOC_Os08g24610
OsAffx.29330.1.S1_at--1018--8511Chr08:14743912..14743936 (25 bp)
TGGAGGCCCGGAGAATTTCACGAGC
LOC_Os08g24610
OsAffx.29330.1.S1_at--735--1411Chr08:14743884..14743908 (25 bp)
AGAAATCCACGAGCCACTGGTGCAA
LOC_Os08g24610
Target Sequence 
CGGTGAACATCCAGGGCACGTCGTTCTCCACGGTGGAGGCGCCGGGGCCTTGGTTGCCGGCACACACCACGAACGGAATA
CTTCTCCATGGCGCTGTAGGCGGCGATGGCGACCACGTCGCGGTCGTAGGTCGTCTTGACTTCTTGGCTGATAGAGAAGG
AGATGACGTCGACGTCGTCATGGACGGCCCTCGTCCATGGCGTGGATTACTGCGTCGTCCGAGCAGGCACGGTAGTCGCC
AACAAGTGACGTGGTTTCTAGAAACGTATCTCCCAGGTACTGAACTTACTCTTCCACTCAGGTACAAGGAATTTCCAGGC
CCAACACTGCCCCTGCTCGCGCCTTGGGACCAAGGGTCCGGCCCTCCATGCAGTTCACTGGAAGCTCCTCGCTTCCTGAG
CAGCAGAGCAGGTGTACGGGACAAGGTGGAGGCCCGGAGAATTTCACGAGCCGAAGAAATCCACGAGCCACTGGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis