Browse Element(s) Details


OsAffx.29331.1.S1_at

Description tigr:9636.m02411
TID=OsAffx.29331.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2462010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24570NANA8+14718925..14725598retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24580NANA8+14728711..14731793retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24590Os.47463.1.S1_x_at6/118+14738224..14741948transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24590Os.14491.2.S1_x_at4/118+14738224..14741948transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24600OsAffx.17131.1.S1_at11/118+14742476..14743156hypothetical protein
LOC_Os08g24610OsAffx.29330.1.S1_at11/118+14743508..14744566hypothetical protein
LOC_Os08g24620OsAffx.29331.1.S1_at10/118+14746184..14747111hypothetical protein
LOC_Os08g24630Os.27296.1.A1_at11/118+14753908..14755034serine/threonine protein kinase, putative, expressed
LOC_Os08g24640OsAffx.21897.5.S1_x_at2/118+14760302..14763243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24650NANA8+14763560..14769655retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24660OsAffx.29532.2.S1_at2/118+14771976..14773455transposon protein, putative, unclassified
LOC_Os08g24660OsAffx.29532.2.S1_x_at1/118+14771976..14773455transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29331.1.S1_at--705--451Chr08:14746254..14746617 (25 bp)
ATCTCACACCTACTGTGCTCAAGCT
LOC_Os08g24620
OsAffx.29331.1.S1_at--1040--9691Chr08:6333675..6334021 (25 bp)
TCACACCTACTGTGCTCAAGCTTAG
NONE
OsAffx.29331.1.S1_at--271--2172Chr08:14746259..14746622 (25 bp)
ACACCTACTGTGCTCAAGCTTAGAG
LOC_Os08g24620
OsAffx.29331.1.S1_at--566--1751Chr08:14746261..14746624 (25 bp)
ACCTACTGTGCTCAAGCTTAGAGTG
LOC_Os08g24620
OsAffx.29331.1.S1_at--1080--9911Chr08:14746264..14746627 (25 bp)
TACTGTGCTCAAGCTTAGAGTGCGT
LOC_Os08g24620
OsAffx.29331.1.S1_at--79--7331Chr08:14746609..14746631 (23 bp)
GTGCTCAAGCTTAGAGTGCGTGTGA
LOC_Os08g24620
OsAffx.29331.1.S1_at--924--3231Chr08:14746612..14746636 (25 bp)
CAAGCTTAGAGTGCGTGTGAGAAGT
LOC_Os08g24620
OsAffx.29331.1.S1_at--601--1451Chr08:14746631..14746655 (25 bp)
AGAAGTGAAGTGAAGAACTCTATTC
LOC_Os08g24620
OsAffx.29331.1.S1_at--719--5371Chr08:14746642..14746666 (25 bp)
GAAGAACTCTATTCATAGGACAGGT
LOC_Os08g24620
OsAffx.29331.1.S1_at--995--3751Chr08:14746648..14746668 (21 bp)
CTCTATTCATAGGACAGGTATTGGC
LOC_Os08g24620
OsAffx.29331.1.S1_at--362--111Chr08:14746652..14747067 (25 bp)
ATTCATAGGACAGGTATTGGCGGCA
LOC_Os08g24620
Target Sequence 
ATCTCACACCTACTGTGCTCAAGCTTAGAGTGCGTGTGAGAAGTGAAGTGAAGAACTCTATTCATAGGACAGGTATTGGC
GGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis