Browse Element(s) Details


OsAffx.29448.1.S1_at

Description tigr:9636.m03113
TID=OsAffx.29448.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DC1 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3117011/11C1-like domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31140OsAffx.17261.1.S1_at11/118+19111548..19112696heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os08g31140Os.8543.1.S1_at3/118+19111548..19112696heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os08g31150NANA8+19116801..19124338retrotransposon protein, putative, unclassified
LOC_Os08g31160NANA8+19124570..19125088hypothetical protein
LOC_Os08g31170OsAffx.29448.1.S1_at11/118+19133989..19134816C1-like domain containing protein
LOC_Os08g31180OsAffx.17263.1.S1_at11/118+19144478..19144918hypothetical protein
LOC_Os08g31190NANA8+19145842..19148441transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29448.1.S1_at--158--611Chr08:19134476..19134500 (25 bp)
ATGCGCGCGGCCTGGTGTACCACTG
LOC_Os08g31170
OsAffx.29448.1.S1_at--1135--8611Chr08:19134464..19134488 (25 bp)
TGGTGTACCACTGCTCCGGCCGAGG
LOC_Os08g31170
OsAffx.29448.1.S1_at--445--8351Chr08:19134300..19134324 (25 bp)
GGCGGCCGCAGGTTCTGGTTCTACC
LOC_Os08g31170
OsAffx.29448.1.S1_at--78--11Chr08:19134285..19134309 (25 bp)
TGGTTCTACCGGTCGTACTCGTACG
LOC_Os08g31170
OsAffx.29448.1.S1_at--793--7231Chr08:19134228..19134252 (25 bp)
GTCGCGTGCCTCAAGCGCATGCAGA
LOC_Os08g31170
OsAffx.29448.1.S1_at--762--2671Chr08:19134216..19134240 (25 bp)
AAGCGCATGCAGACGCAGTACGGCG
LOC_Os08g31170
OsAffx.29448.1.S1_at--345--8491Chr08:19134082..19134106 (25 bp)
TGGCTTGGAGCGGTTCTTGACGATC
LOC_Os08g31170
OsAffx.29448.1.S1_at--365--10751Chr08:19134066..19134090 (25 bp)
TTGACGATCGTTGCCGGTGTCATAC
LOC_Os08g31170
OsAffx.29448.1.S1_at--954--3971Chr08:19134052..19134076 (25 bp)
CGGTGTCATACGTGCCATCATCGGG
LOC_Os08g31170
OsAffx.29448.1.S1_at--691--7691Chr08:19134029..19134053 (25 bp)
GGGTCATCTTCGGTGATCCGACGTT
LOC_Os08g31170
OsAffx.29448.1.S1_at--906--3971Chr08:19134019..19134043 (25 bp)
CGGTGATCCGACGTTCTTGATTGAA
LOC_Os08g31170
Target Sequence 
ATGCGCGCGGCCTGGTGTACCACTGCTCCGGCCGAGGCGACGGCGGCCTCGGCCTCGACCTCCACCCGACGTGCGCGTCC
CTGCCGGCGCGGTTCGCCGTCGGCGGCGGCCGCGTCTTCGAGCTCCGGAAGGAGGCGTCGAGGCGGTGCGCCGAGTGCGG
GGAGATGAGGTGCGGCGGCGGCCGCAGGTTCTGGTTCTACCGGTCGTACTCGTACGCCGACGGCGACGGCGAGGCGCTGT
ACCTGCACGTCGCGTGCCTCAAGCGCATGCAGACGCAGTACGGCGCCGCCGCCGACGTCCGGAGCGTGCAGGTGATGAGC
TCGCCGGTGATGGAGGGCGTGCTGCGGAGCCTGCCGCCGGCCAGGAGGAGGGCGACGGCGGCGGGCGGTGGCGGTGGCTT
GGAGCGGTTCTTGACGATCGTTGCCGGTGTCATACGTGCCATCATCGGGGTCATCTTCGGTGATCCGACGTTCTTGATTG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis