Browse Element(s) Details


OsAffx.29485.1.S1_at

Description tigr:9636.m03325
TID=OsAffx.29485.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3321011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g33210OsAffx.29485.1.S1_at11/118+20569299..20570311expressed protein
LOC_Os08g33220NANA8+20577722..20579730retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g33230OsAffx.22722.1.S1_x_at1/118+20580613..20581659retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g33240NANA8+20582027..20582401retrotransposon protein, putative, unclassified
LOC_Os08g33250OsAffx.1647.1.S1_at1/118+20583209..20586101retrotransposon protein, putative, unclassified
LOC_Os08g33260OsAffx.29486.4.S1_at10/118+20587563..20589583hypothetical protein
LOC_Os08g33260OsAffx.29486.2.S1_x_at1/118+20587563..20589583hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29485.1.S1_at--953--7511Chr08:20570182..20570206 (25 bp)
GTGGACGGGACGACGTACAAGTACA
LOC_Os08g33210
OsAffx.29485.1.S1_at--582--5771Chr08:20570174..20570198 (25 bp)
GACGACGTACAAGTACAGGCCGCCG
LOC_Os08g33210
OsAffx.29485.1.S1_at--761--1891Chr08:20570170..20570194 (25 bp)
ACGTACAAGTACAGGCCGCCGGCGT
LOC_Os08g33210
OsAffx.29485.1.S1_at--69--3991Chr08:20570118..20570142 (25 bp)
CGGGCTACCAGGTCCTGGAGTCGGA
LOC_Os08g33210
OsAffx.29485.1.S1_at--1026--3951Chr08:20570097..20570121 (25 bp)
CGGAGGAGGTCAGGCGCCTCGGGAT
LOC_Os08g33210
OsAffx.29485.1.S1_at--852--891Chr08:20570086..20570110 (25 bp)
AGGCGCCTCGGGATGCGCGCGCGGC
LOC_Os08g33210
OsAffx.29485.1.S1_at--652--8591Chr08:20569975..20569999 (25 bp)
TGGTCGGGCGCGCTTGTCCATGTCG
LOC_Os08g33210
OsAffx.29485.1.S1_at--944--6131Chr08:20569816..20569840 (25 bp)
GAGGTGGCGCGGCTTGTGAAGGAGA
LOC_Os08g33210
OsAffx.29485.1.S1_at--242--1591Chr08:20569755..20569779 (25 bp)
AGCTCTGCGTCGACAGGGACCACAG
LOC_Os08g33210
OsAffx.29485.1.S1_at--770--3771Chr08:20569753..20569777 (25 bp)
CTCTGCGTCGACAGGGACCACAGCT
LOC_Os08g33210
OsAffx.29485.1.S1_at--794--4131Chr08:20569662..20569686 (25 bp)
CGCTCGTCTCGTCGGACAAGAAGAA
LOC_Os08g33210
Target Sequence 
GTGGACGGGACGACGTACAAGTACAGGCCGCCGGCGTCGGCGGCGGCGGCGCTGCGCGACCACCCGGGCTACCAGGTCCT
GGAGTCGGAGGAGGTCAGGCGCCTCGGGATGCGCGCGCGGCCGCTCGACGCCGACGCGCCGCTCAAGCCCGGCAAGCTCT
ACTTCCTCGTCGAGCTCCCTCGCCTCGCCCGCGCGCCGCGGCGGACGTGGTCGGGCGCGCTTGTCCATGTCGGCGGCGCC
GGGGAGAGGTTGGAGAGCATGATGCTGTCGCGGCGGTCGGCGTCGGACGTGGCGGCGTCGCCGGTGTCGTCGGTGGAGGC
CGGCGAGGGCGGCGCCGTGCGGCTGCGGATGCGGCTGCCCAAGGCGGAGGTGGCGCGGCTTGTGAAGGAGAGCCGCGACG
CCGCCGAGGCCGCCGAGAAGATCATGCAGCTCTGCGTCGACAGGGACCACAGCTCCGCGCCGGCCACCCCCGTCCTCCGC
CGCCCGCCGCCGCTGCCGCTGCCGCTGCCGCTGCCGGCGGCGCTCGTCTCGTCGGACAAGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis